mskcc-omics-workflows/modules
Jul 2025 – Jul 2025
1 Month active
Languages Used
GroovyNextflowShellYAML
Technical Skills
BioinformaticsContainerizationDevOpsNextflowShell ScriptingWorkflow Development
“Fei
PROFILE
“fei
During July 2025, Xu Fu developed a Noise Calculation Module for BAM files within the mskcc-omics-workflows/modules repository, focusing on bioinformatics workflow reliability and reproducibility. Xu designed the module in Nextflow and Groovy, implementing a main workflow, environment configuration, and comprehensive metadata handling. The solution included automated end-to-end testing and HTML report generation, supporting target intervals and reference genome inputs. Xu also addressed a CALCULATENOISE container image resolution issue by upgrading to version 0.2.5 and correcting the image path to a direct registry reference. This work demonstrated depth in containerization, workflow development, and YAML configuration for robust pipeline integration.
Overall Statistics
Feature vs Bugs
50%Features
Repository Contributions
3Total
Bugs
1
Commits
3
Features
1
Lines of code
513
Activity Months1
Your Network
8 people
Work History
July 2025
3 Commits • 1 Features
Jul 1, 2025Month: 2025-07 — concise monthly summary focusing on key accomplishments for mskcc-omics-workflows/modules highlighting delivered features, major fixes, impact, and technologies demonstrated.
3 Commits • 1 Features
Jul 1, 2025Month: 2025-07 — concise monthly summary focusing on key accomplishments for mskcc-omics-workflows/modules highlighting delivered features, major fixes, impact, and technologies demonstrated.
July 2025
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance93.4%
AI Usage20.0%
Skills & Technologies
Programming Languages
GroovyNextflowShellYAML
Technical Skills
BioinformaticsContainerizationDevOpsNextflowShell ScriptingWorkflow DevelopmentYAML Configuration
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