compbiozurich/UZH-BIO392
Apr 2025 – May 2025
2 Months active
Languages Used
AWKMarkdownRR MarkdownBASHJSONJupyter NotebookPython
Technical Skills
BioinformaticsCost EstimationData AnalysisData Analysis DocumentationData CurationData Storage
BaBurri
PROFILE
Baburri
Contributed to the compbiozurich/UZH-BIO392 repository by developing educational materials, analysis workflows, and comprehensive documentation to support genomics teaching and reproducible research. Established project scaffolding, onboarding guides, and refined module documentation to streamline student engagement and maintain repository hygiene. Built end-to-end Jupyter Notebooks and Python scripts for STR genotype analysis, including data wrangling with pandas, variant filtering, dimensionality reduction, clustering, and supervised classification. Enhanced CNV and VCF documentation, integrating domain standards and API usage guidance. Leveraged skills in Python, R, and data visualization libraries such as Matplotlib and Seaborn to deliver scalable, clear, and maintainable bioinformatics solutions.
Overall Statistics
Feature vs Bugs
93%Features
Repository Contributions
40Total
Bugs
1
Commits
40
Features
13
Lines of code
2,307
Activity Months2
Your Network
27 peopleShared Repositories
27
Your NameawildbergerMember
anaispradoMember
anschumaMember
AnoukMember
AyeshaMember
strebelindaMember
strebelindaMember
Emily MosbergerMember
GarfieldfeiMember
Work History
May 2025
12 Commits • 4 Features
May 1, 2025May 2025 (compbiozurich/UZH-BIO392): Delivered a focused set of educational materials and end-to-end analysis workflows to support student learning, reproducibility, and practical data analysis in sequence analysis, VCF interpretation, STR genotype analysis, and CNV concepts. Key outputs include new documentation, notebooks, and Python scripts that enable end-to-end data processing, filtering, visualization, and basic predictive analytics on STR data, with an emphasis on onboarding, clarity, and scalable workflows suitable for Progenetix data integration and API usage.
12 Commits • 4 Features
May 1, 2025May 2025 (compbiozurich/UZH-BIO392): Delivered a focused set of educational materials and end-to-end analysis workflows to support student learning, reproducibility, and practical data analysis in sequence analysis, VCF interpretation, STR genotype analysis, and CNV concepts. Key outputs include new documentation, notebooks, and Python scripts that enable end-to-end data processing, filtering, visualization, and basic predictive analytics on STR data, with an emphasis on onboarding, clarity, and scalable workflows suitable for Progenetix data integration and API usage.
May 2025
April 2025
28 Commits • 9 Features
Apr 1, 2025April 2025 results for compbiozurich/UZH-BIO392: established project scaffolding and onboarding documentation, expanded and refined BaBurri-related documentation across modules, and delivered learning-material updates. Also performed repository hygiene to ensure a clean, maintainable workspace and set foundation for reproducible analyses and rapid onboarding.
April 2025
28 Commits • 9 Features
Apr 1, 2025April 2025 results for compbiozurich/UZH-BIO392: established project scaffolding and onboarding documentation, expanded and refined BaBurri-related documentation across modules, and delivered learning-material updates. Also performed repository hygiene to ensure a clean, maintainable workspace and set foundation for reproducible analyses and rapid onboarding.
Activity
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Quality Metrics
Correctness95.0%
Maintainability94.6%
Architecture93.0%
Performance92.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
AWKBASHJSONJupyter NotebookMarkdownPythonRR MarkdownSQLShell
Technical Skills
BioinformaticsCommand Line InterfaceCost EstimationData AnalysisData Analysis DocumentationData CurationData StorageData VisualizationDatabase DocumentationDocumentationEducational Content CreationFile Format EvaluationGenetic AnalysisGenomic Data AnalysisGenomic Data Processing
Repositories Contributed To
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