NOAA-FIMS/case-studies
Jan 2025 – Apr 2025
3 Months active
Languages Used
C++RMarkdown
Technical Skills
FIMSFisheries ScienceR ProgrammingStatistical ModelingTMBBayesian Inference
Cole-Monnahan-NOAA
PROFILE
Cole-monnahan-noaa
Worked on the NOAA-FIMS/case-studies repository, delivering three features over three months focused on fisheries modeling and analysis. Developed and integrated weights-at-age data into the Pollock case study, refactoring the model setup with wrapper functions in R to improve modularity and reproducibility. Enhanced documentation by restructuring case studies into core and advanced sections, adding Bayesian inference and likelihood profiling using Quarto and R. Implemented advanced model evaluation tools, including conditional AIC calculation and effective degrees of freedom visualization, leveraging TMB and R. The work emphasized maintainability, analytical extensibility, and robust model selection for mixed-effects fisheries science applications.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
3Total
Bugs
0
Commits
3
Features
3
Lines of code
1,169
Activity Months3
Your Network
92 peopleWork History
April 2025
1 Commits • 1 Features
Apr 1, 2025Concise monthly summary for NOAA-FIMS/case-studies (2025-04): Focused on delivering a robust model evaluation and selection framework with clear business value for NOAA case studies.
1 Commits • 1 Features
Apr 1, 2025Concise monthly summary for NOAA-FIMS/case-studies (2025-04): Focused on delivering a robust model evaluation and selection framework with clear business value for NOAA case studies.
April 2025
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 monthly summary for NOAA-FIMS/case-studies focused on delivering modular documentation enhancements and expanding analytical capabilities. Key feature delivery reorganized the GOA Pollock case study into core and advanced features, introducing an advanced-features.qmd with sections for Bayesian integration and likelihood profiling to extend analytical capabilities and improve documentation clarity.
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 monthly summary for NOAA-FIMS/case-studies focused on delivering modular documentation enhancements and expanding analytical capabilities. Key feature delivery reorganized the GOA Pollock case study into core and advanced features, introducing an advanced-features.qmd with sections for Bayesian integration and likelihood profiling to extend analytical capabilities and improve documentation clarity.
January 2025
1 Commits • 1 Features
Jan 1, 2025January 2025 monthly summary for NOAA-FIMS/case-studies: Pollock Case Study updated to FIMS v0.3.0.0 integration with weights-at-age data and wrapper-based model setup; R scripts adjusted to run FIMS via the power user interface; refactored model setup to use wrapper functions; aligned with latest release for compatibility and reproducibility.
1 Commits • 1 Features
Jan 1, 2025January 2025 monthly summary for NOAA-FIMS/case-studies: Pollock Case Study updated to FIMS v0.3.0.0 integration with weights-at-age data and wrapper-based model setup; R scripts adjusted to run FIMS via the power user interface; refactored model setup to use wrapper functions; aligned with latest release for compatibility and reproducibility.
January 2025
Activity
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Quality Metrics
Correctness86.6%
Maintainability83.4%
Architecture86.6%
Performance63.4%
AI Usage26.6%
Skills & Technologies
Programming Languages
C++MarkdownR
Technical Skills
Bayesian InferenceData AnalysisData VisualizationFIMSFisheries ScienceLikelihood ProfilingModel EvaluationQuartoR ProgrammingStatistical ModelingTMBTMB (Template Model Builder)
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