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Amirata Ghaffarian

PROFILE

Amirata Ghaffarian

Contributed a feature enhancement to the nf-core/modules repository by updating the BLAST command’s database lookup logic to support multiple file extensions, thereby enabling compatibility with a wider range of BLAST database formats. This work, implemented in Groovy and leveraging skills in bioinformatics and command line tools, streamlined the process of database recognition and reduced manual setup for users. The approach improved pipeline reliability and interoperability by minimizing potential errors during execution. Collaboration with other contributors ensured adherence to nf-core standards and code quality, resulting in a more flexible and user-friendly data processing workflow for heterogeneous BLAST database environments.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

1Total
Bugs
0
Commits
1
Features
1
Lines of code
4
Activity Months1

Work History

March 2026

1 Commits • 1 Features

Mar 1, 2026

March 2026: Delivered a feature enhancement to the BLAST command in nf-core/modules enabling database lookups across multiple formats by updating the lookup logic to recognize new file extensions. This increases compatibility with diverse BLAST databases, reduces user setup friction, and improves pipeline reliability. No separate critical bug fixes were reported this month; stability improvements are realized through the enhanced database handling. Implemented in commit 3498ba6389ea771054aae85cc3ac2105d108f114 with co-authored input from Amir Ata Ghaffarian Moslemi Neyshabour.

Activity

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Quality Metrics

Correctness80.0%
Maintainability80.0%
Architecture80.0%
Performance80.0%
AI Usage20.0%

Skills & Technologies

Programming Languages

Groovy

Technical Skills

bioinformaticscommand line toolsdata processing

Repositories Contributed To

1 repo

Overview of all repositories you've contributed to across your timeline

nf-core/modules

Mar 2026 Mar 2026
1 Month active

Languages Used

Groovy

Technical Skills

bioinformaticscommand line toolsdata processing