Olink-Proteomics/OlinkRPackage
Oct 2024 – Jun 2025
8 Months active
Languages Used
RRoxygenSVG
Technical Skills
BioinformaticsData AnalysisData VisualizationR ProgrammingStatistical AnalysisData Wrangling
Amrita Kar
PROFILE
Amrita Kar
Overall Statistics
Feature vs Bugs
75%Features
Repository Contributions
18Total
Bugs
2
Commits
18
Features
6
Lines of code
4,144
Activity Months8
Your Network
10 people
Work History
June 2025
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly performance highlights for OlinkRPackage: strengthened test coverage and input validation for normalization workflows, enhancing code reliability and reducing risk of data-quality regressions in downstream analyses.
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly performance highlights for OlinkRPackage: strengthened test coverage and input validation for normalization workflows, enhancing code reliability and reducing risk of data-quality regressions in downstream analyses.
June 2025
May 2025
1 Commits
May 1, 2025May 2025 – OlinkRPackage: Delivered stability improvements in the quantification workflow. Major bug fix for quantification method priority handling when multiple quant columns exist across datasets, with added tests. Result: more reliable and reproducible cross-dataset quantification; reduced risk of incorrect method selection. Technologies demonstrated include R scripting, robust multi-quant parsing, and test-driven development.
May 2025
1 Commits
May 1, 2025May 2025 – OlinkRPackage: Delivered stability improvements in the quantification workflow. Major bug fix for quantification method priority handling when multiple quant columns exist across datasets, with added tests. Result: more reliable and reproducible cross-dataset quantification; reduced risk of incorrect method selection. Technologies demonstrated include R scripting, robust multi-quant parsing, and test-driven development.
April 2025
2 Commits
Apr 1, 2025April 2025 monthly summary for OlinkRPackage (Olink-Proteomics). Focused on hardening the normalization workflow input validation and expanding test coverage to prevent silent failures in production pipelines. Delivered robust validation and associated tests, improving data integrity and reliability for downstream analyses.
2 Commits
Apr 1, 2025April 2025 monthly summary for OlinkRPackage (Olink-Proteomics). Focused on hardening the normalization workflow input validation and expanding test coverage to prevent silent failures in production pipelines. Delivered robust validation and associated tests, improving data integrity and reliability for downstream analyses.
April 2025
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 (2025-02) Monthly summary focused on delivering a targeted enhancement to the OlinkRPackage visualization suite, with concrete improvements to the bridgeability plot to improve clarity and interpretability for researchers and decision-makers.
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 (2025-02) Monthly summary focused on delivering a targeted enhancement to the OlinkRPackage visualization suite, with concrete improvements to the bridgeability plot to improve clarity and interpretability for researchers and decision-makers.
January 2025
1 Commits • 1 Features
Jan 1, 2025Month: 2025-01 — Focused on code hygiene and maintainability in the OlinkRPackage. Key feature delivered: standardized the bridgeable_plot function name to olink_bridgeability_plot to align with project naming conventions; no functional changes were introduced. Commit 4c719c250aa57bc4bb0a465ea8133eb963030119 documents the rename (Changed name from bridgeable_plot to olink_bridgeability_plot based on poll). No major bugs fixed in this period. Overall impact: improved API consistency, easier onboarding for contributors, and smoother future refactors. Technologies/skills demonstrated: R package development, refactoring, naming conventions, version control discipline, and traceable commits.
1 Commits • 1 Features
Jan 1, 2025Month: 2025-01 — Focused on code hygiene and maintainability in the OlinkRPackage. Key feature delivered: standardized the bridgeable_plot function name to olink_bridgeability_plot to align with project naming conventions; no functional changes were introduced. Commit 4c719c250aa57bc4bb0a465ea8133eb963030119 documents the rename (Changed name from bridgeable_plot to olink_bridgeability_plot based on poll). No major bugs fixed in this period. Overall impact: improved API consistency, easier onboarding for contributors, and smoother future refactors. Technologies/skills demonstrated: R package development, refactoring, naming conventions, version control discipline, and traceable commits.
January 2025
December 2024
2 Commits • 1 Features
Dec 1, 2024December 2024 (Olink-Proteomics/OlinkRPackage): Key delivery focused on bridgeable plot generation and visualization improvements. Highlights include refined plotting logic with better text color handling, data handling improvements ensuring distinct median counts, and improved KS test reproducibility by seeding and aligning inputs with olink_normalization_bridgeable. Documentation updated to reflect changes. These enhancements reduce variability in bridgeable plots, improve trust in cross-sample comparisons, and support reproducible research workflows.
December 2024
2 Commits • 1 Features
Dec 1, 2024December 2024 (Olink-Proteomics/OlinkRPackage): Key delivery focused on bridgeable plot generation and visualization improvements. Highlights include refined plotting logic with better text color handling, data handling improvements ensuring distinct median counts, and improved KS test reproducibility by seeding and aligning inputs with olink_normalization_bridgeable. Documentation updated to reflect changes. These enhancements reduce variability in bridgeable plots, improve trust in cross-sample comparisons, and support reproducible research workflows.
November 2024
8 Commits • 1 Features
Nov 1, 2024November 2024 (2024-11) monthly summary for OlinkRPackage focused on delivering a cross-platform visualization feature, improving data visualization reliability, and strengthening maintainability. The release centered on Bridgeable Plots for OlinkAnalyze, with improved export capabilities, robust data handling, color-coded visuals, and dynamic captions, accompanied by documentation and CI improvements.
8 Commits • 1 Features
Nov 1, 2024November 2024 (2024-11) monthly summary for OlinkRPackage focused on delivering a cross-platform visualization feature, improving data visualization reliability, and strengthening maintainability. The release centered on Bridgeable Plots for OlinkAnalyze, with improved export capabilities, robust data handling, color-coded visuals, and dynamic captions, accompanied by documentation and CI improvements.
November 2024
October 2024
2 Commits • 1 Features
Oct 1, 2024October 2024 monthly summary for OlinkRPackage: Key feature delivery and quality improvements focused on cross-platform assay comparability and data quality visualization. Delivered Bridgeable Assay Visualization Suite by introducing a new function, bridgeable_plts, that generates a visualization suite to compare bridgeable assays across Olink platforms (IQR/range distributions, R-squared correlation plots, median counts, and KS plots) to help users quickly assess cross-platform comparability and data quality. Subsequently refactored processing to apply bridgeable_plts directly to the full dataset for per-assay efficiency and a streamlined workflow. Fixed an issue causing repeated assays in a loop; now each assay is plotted on its own page for clarity and reportability.
October 2024
2 Commits • 1 Features
Oct 1, 2024October 2024 monthly summary for OlinkRPackage: Key feature delivery and quality improvements focused on cross-platform assay comparability and data quality visualization. Delivered Bridgeable Assay Visualization Suite by introducing a new function, bridgeable_plts, that generates a visualization suite to compare bridgeable assays across Olink platforms (IQR/range distributions, R-squared correlation plots, median counts, and KS plots) to help users quickly assess cross-platform comparability and data quality. Subsequently refactored processing to apply bridgeable_plts directly to the full dataset for per-assay efficiency and a streamlined workflow. Fixed an issue causing repeated assays in a loop; now each assay is plotted on its own page for clarity and reportability.
Activity
Loading activity data...
Quality Metrics
Correctness85.6%
Maintainability86.2%
Architecture78.8%
Performance73.8%
AI Usage20.0%
Skills & Technologies
Programming Languages
RRoxygenSVG
Technical Skills
BioinformaticsCode RenamingData AnalysisData ManipulationData VisualizationData WranglingData visualizationDocumentationPackage DevelopmentPackage ManagementRR Package DevelopmentR ProgrammingR package developmentR programming
Repositories Contributed To
Overview of all repositories you've contributed to across your timeline