nf-core/modules
Mar 2026 – Apr 2026
2 Months active
Languages Used
NextflowYAMLGroovy
Technical Skills
Nextflowbioinformaticsdata analysisdata processingsoftware developmentsoftware testing
carolineclbcq-fr
PROFILE
Carolineclbcq-fr
Worked on the nf-core/modules repository to enhance version handling and output structures across several bioinformatics modules, including BACPHLIP, BFF, CRAMINO, and CALDER2. Applied Groovy and Nextflow to consolidate version reporting, improve metadata clarity, and expand test coverage, which increased reproducibility and maintainability. Addressed issues in BAMAlignCleaner by correcting tool version retrieval and updating metadata for more accurate outputs. Updated test configurations and stabilized outputs for CALDER2 modules, reducing pipeline failures and maintenance overhead. Collaborated with other contributors, maintained rigorous code review standards, and focused on improving CI reliability through expanded testing and consistent configuration management practices.
Overall Statistics
Feature vs Bugs
33%Features
Repository Contributions
5Total
Bugs
2
Commits
5
Features
1
Lines of code
1,017
Activity Months2
Work History
April 2026
1 Commits
Apr 1, 2026April 2026 monthly summary for nf-core/modules: Delivered CALDER2 Versioning and Input Handling fixes, updated test configurations to align with the new versioning structure, and stabilized outputs. These changes enhance reproducibility and reliability of CALDER2-driven modules, reducing downstream pipeline failures and maintenance overhead. The work demonstrates solid versioning discipline, test/config management, and cross-team collaboration.
1 Commits
Apr 1, 2026April 2026 monthly summary for nf-core/modules: Delivered CALDER2 Versioning and Input Handling fixes, updated test configurations to align with the new versioning structure, and stabilized outputs. These changes enhance reproducibility and reliability of CALDER2-driven modules, reducing downstream pipeline failures and maintenance overhead. The work demonstrates solid versioning discipline, test/config management, and cross-team collaboration.
April 2026
March 2026
4 Commits • 1 Features
Mar 1, 2026March 2026 nf-core/modules: Implemented cross-module version handling and output structure improvements (BACPHLIP, BFF, CRAMINO), fixed BAMAlignCleaner version retrieval (val->eval) and metadata, and advanced metadata/tests and linting to improve reproducibility and maintainability.
March 2026
4 Commits • 1 Features
Mar 1, 2026March 2026 nf-core/modules: Implemented cross-module version handling and output structure improvements (BACPHLIP, BFF, CRAMINO), fixed BAMAlignCleaner version retrieval (val->eval) and metadata, and advanced metadata/tests and linting to improve reproducibility and maintainability.
Activity
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Quality Metrics
Correctness88.0%
Maintainability80.0%
Architecture80.0%
Performance80.0%
AI Usage36.0%
Skills & Technologies
Programming Languages
GroovyNextflowYAML
Technical Skills
Nextflowbioinformaticsdata analysisdata processingsoftware developmentsoftware testingtesting
Repositories Contributed To
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