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Dan Skelly

PROFILE

Dan Skelly

During October 2024, contributed to the satijalab/seurat repository by delivering a configurable option for the RunUMAP function, specifically exposing the uwot.approx_pow parameter. This enhancement allowed users to fine-tune the approximation of the power function within the uwot UMAP implementation, offering greater flexibility in balancing embedding quality and computational performance across diverse datasets. The work focused on careful API surface design to maintain stability while integrating seamlessly with existing workflows. Utilizing R and leveraging skills in bioinformatics, data visualization, and dimensionality reduction, the contribution broadened Seurat’s applicability and reduced the need for user workarounds without introducing additional maintenance overhead.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

1Total
Bugs
0
Commits
1
Features
1
Lines of code
6
Activity Months1

Your Network

36 people

Same Organization

@jax.org
2

Shared Repositories

34

Work History

October 2024

1 Commits • 1 Features

Oct 1, 2024

October 2024 monthly summary for satijalab/seurat. Delivered a configurable option for RunUMAP by exposing uwot.approx_pow, enabling users to control the approximation of the power function in uwot's UMAP implementation. This provides greater flexibility for embedding quality and performance trade-offs on diverse datasets. No major bugs fixed this month. Overall impact: enhances user control, broadens applicability of Seurat's UMAP workflows, reduces need for workarounds, and supports scaling to larger datasets. Technologies/skills demonstrated: API surface design, integration with uwot, commit-based change tracking, and repository maintenance.

Activity

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Quality Metrics

Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%

Skills & Technologies

Programming Languages

R

Technical Skills

BioinformaticsData VisualizationDimensionality Reduction

Repositories Contributed To

1 repo

Overview of all repositories you've contributed to across your timeline

satijalab/seurat

Oct 2024 Oct 2024
1 Month active

Languages Used

R

Technical Skills

BioinformaticsData VisualizationDimensionality Reduction