
Ditte Jacobs contributed to the nf-core/modules repository by addressing a metadata configuration issue in the GATK4 BaseRecalibrator module. She updated the meta.yml file using YAML to enforce mandatory inputs for known_sites and known_sites_tbi, removing their previous 'optional' status. This change aligned the module’s configuration with the GATK4 tool manual, ensuring that workflows require the correct input files and reducing the risk of configuration errors. Her work focused on configuration management, improving the reliability and reproducibility of BaseRecalibrator workflows. The update enhanced tool usage by lowering runtime failures and supporting more robust pipeline execution within the nf-core/modules ecosystem.
May 2025: nf-core/modules delivered a metadata fix for GATK4 BaseRecalibrator to enforce mandatory inputs. Updated meta.yml to remove the 'optional' designation from known_sites and known_sites_tbi, aligning with the GATK4 tool manual and ensuring correct tool configuration and usage. This reduces configuration errors, improves reproducibility, and lowers runtime failures for BaseRecalibrator workflows.
May 2025: nf-core/modules delivered a metadata fix for GATK4 BaseRecalibrator to enforce mandatory inputs. Updated meta.yml to remove the 'optional' designation from known_sites and known_sites_tbi, aligning with the GATK4 tool manual and ensuring correct tool configuration and usage. This reduces configuration errors, improves reproducibility, and lowers runtime failures for BaseRecalibrator workflows.

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