bioconda/bioconda-recipes
Oct 2024 – Jan 2026
3 Months active
Languages Used
ShellYAMLCPython
Technical Skills
Build System ConfigurationCross-Platform DevelopmentPackage ManagementBioinformaticsBuild SystemsDevOps
Andreas Sjödin
PROFILE
Andreas Sjödin
Andreas Sjödin contributed to the bioconda/bioconda-recipes repository by developing and packaging four bioinformatics tools over three months, focusing on cross-platform compatibility and workflow enhancement. He improved build scripts and configuration for kmer-jellyfish, ensuring reliable installation across diverse operating systems using C, Python, and YAML. Andreas added msa4u and bam2plot, expanding visualization capabilities for sequence and coverage data, and extended pblat support to additional architectures through targeted patching and metadata updates. In January 2026, he introduced NgSpeciesID for long-read amplicon clustering, integrating dependencies and refining package management. His work demonstrated depth in build systems and bioinformatics tooling.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
5Total
Bugs
0
Commits
5
Features
4
Lines of code
188
Activity Months3
Your Network
544 peopleWork History
January 2026
1 Commits • 1 Features
Jan 1, 2026January 2026 monthly work summary for bioconda/bioconda-recipes focusing on feature delivery for long-read amplicon data. Key outcome: introduction of NgSpeciesID package enabling clustering and consensus forming for long-read amplicon sequencing, with dependencies parasail-python and medaka. No major bugs reported this month. This work strengthens research workflows by improving clustering accuracy and reproducibility.
1 Commits • 1 Features
Jan 1, 2026January 2026 monthly work summary for bioconda/bioconda-recipes focusing on feature delivery for long-read amplicon data. Key outcome: introduction of NgSpeciesID package enabling clustering and consensus forming for long-read amplicon sequencing, with dependencies parasail-python and medaka. No major bugs reported this month. This work strengthens research workflows by improving clustering accuracy and reproducibility.
January 2026
November 2024
3 Commits • 2 Features
Nov 1, 2024November 2024 focused on expanding data analysis capabilities in bioconda-recipes and widening platform support. Delivered two new visualization tools for bioinformatics workflows and extended build compatibility across architectures, enhancing accessibility and adoption in diverse environments. Emphasis on delivering business value through practical tooling, robust cross-platform support, and actionable metadata improvements that streamline onboarding and maintenance.
November 2024
3 Commits • 2 Features
Nov 1, 2024November 2024 focused on expanding data analysis capabilities in bioconda-recipes and widening platform support. Delivered two new visualization tools for bioinformatics workflows and extended build compatibility across architectures, enhancing accessibility and adoption in diverse environments. Emphasis on delivering business value through practical tooling, robust cross-platform support, and actionable metadata improvements that streamline onboarding and maintenance.
October 2024
1 Commits • 1 Features
Oct 1, 2024Month: 2024-10 – Concise monthly summary focusing on key accomplishments for bioconda/bioconda-recipes.
1 Commits • 1 Features
Oct 1, 2024Month: 2024-10 – Concise monthly summary focusing on key accomplishments for bioconda/bioconda-recipes.
October 2024
Activity
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Quality Metrics
Correctness92.0%
Maintainability92.0%
Architecture92.0%
Performance84.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
CPythonShellYAML
Technical Skills
BioinformaticsBuild System ConfigurationBuild SystemsCross-Platform DevelopmentDevOpsPackage ManagementPython PackagingPython developmentbioinformaticspackage management
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