nf-core/modules
Oct 2025 – Jan 2026
3 Months active
Languages Used
nfGroovyNextflowYAML
Technical Skills
BioinformaticsGenomicsNextflowbioinformaticsdata processingfull stack development
dwells-eit
PROFILE
Dwells-eit
Over a three-month period, contributed to the nf-core/modules repository by developing and enhancing bioinformatics workflows for genome assembly and data processing. Built a Pypolca module to polish long-read assemblies with short reads, integrating configuration files, workflow scripts, and comprehensive tests using Nextflow and Groovy. Expanded the Autocycler toolset with modules for subsampling, compression, clustering, trimming, and resolving, while improving output organization and metadata management. Standardized version reporting across core processes and introduced a coordinated autocycler subworkflow, ensuring reproducibility and clarity. Emphasized robust test coverage, disciplined output management, and collaborative updates to maintain stability and facilitate downstream integration.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
12Total
Bugs
0
Commits
12
Features
6
Lines of code
4,236
Activity Months3
Your Network
189 peopleWork History
January 2026
6 Commits • 2 Features
Jan 1, 2026January 2026 monthly summary for nf-core/modules. Focused on delivering consistency and clarity in version reporting across core processes and introducing a comprehensive autocycler subworkflow. These efforts enhance user-facing version visibility, reproducibility, and output organization, accelerating troubleshooting and downstream integration.
6 Commits • 2 Features
Jan 1, 2026January 2026 monthly summary for nf-core/modules. Focused on delivering consistency and clarity in version reporting across core processes and introducing a comprehensive autocycler subworkflow. These efforts enhance user-facing version visibility, reproducibility, and output organization, accelerating troubleshooting and downstream integration.
January 2026
November 2025
5 Commits • 3 Features
Nov 1, 2025November 2025 (nf-core/modules) delivered a targeted set of feature enhancements and quality improvements that strengthen the Autocycler workflow, improve data organization, and keep contributor metadata accurate. The work focused on enabling robust genome assembly processing via an expanded Autocycler toolset, disciplined output management, and metadata hygiene, underpinned by broader test coverage and lint/stability fixes.
November 2025
5 Commits • 3 Features
Nov 1, 2025November 2025 (nf-core/modules) delivered a targeted set of feature enhancements and quality improvements that strengthen the Autocycler workflow, improve data organization, and keep contributor metadata accurate. The work focused on enabling robust genome assembly processing via an expanded Autocycler toolset, disciplined output management, and metadata hygiene, underpinned by broader test coverage and lint/stability fixes.
October 2025
1 Commits • 1 Features
Oct 1, 2025Concise monthly summary for 2025-10 focusing on nf-core/modules: Delivered a new Pypolca module to polish long-read assemblies using short reads, with configuration files, main workflow, and comprehensive tests. This work enhances assembly quality, reproducibility, and seamless integration into nf-core pipelines, delivering tangible value to users relying on high-quality genome assemblies.
1 Commits • 1 Features
Oct 1, 2025Concise monthly summary for 2025-10 focusing on nf-core/modules: Delivered a new Pypolca module to polish long-read assemblies using short reads, with configuration files, main workflow, and comprehensive tests. This work enhances assembly quality, reproducibility, and seamless integration into nf-core pipelines, delivering tangible value to users relying on high-quality genome assemblies.
October 2025
Activity
Loading activity data...
Quality Metrics
Correctness96.6%
Maintainability86.6%
Architecture86.6%
Performance85.0%
AI Usage26.6%
Skills & Technologies
Programming Languages
GroovyNextflowYAMLnf
Technical Skills
BioinformaticsGenomicsNextflowNextflow scriptingbioinformaticsdata pipeline developmentdata processingfull stack developmentgenome assemblymetadata managementnextflowversion controlworkflow developmentworkflow management
Repositories Contributed To
Overview of all repositories you've contributed to across your timeline