nf-core/modules
Mar 2026 – Apr 2026
2 Months active
Languages Used
GroovyNextflowYAML
Technical Skills
Nextflowbioinformaticsmodule developmenttestingworkflow developmentworkflow management
gretherv
PROFILE
Gretherv
Worked on the nf-core/modules repository to standardize and enhance workflow module interfaces, focusing on versioning and output handling. Over two months, migrated multiple modules—including bamreadcount and bwameth/align—to a topic-channel structure, improving version tracking and maintainability. Updated configuration files and test snapshots to align with new interfaces, ensuring reproducibility and reducing future upgrade complexity. Collaborated closely with other contributors through co-authored commits and coordinated reviews. Leveraged Nextflow, Groovy, and YAML to implement these changes, emphasizing robust workflow development, module testing, and workflow management. The work enabled more consistent, auditable, and easily upgradable bioinformatics pipelines across the codebase.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
7Total
Bugs
0
Commits
7
Features
2
Lines of code
1,087
Activity Months2
Work History
April 2026
1 Commits • 1 Features
Apr 1, 2026April 2026 monthly summary for nf-core/modules focusing on the Bwameth Alignment Workflow Version Tracking Enhancement.
1 Commits • 1 Features
Apr 1, 2026April 2026 monthly summary for nf-core/modules focusing on the Bwameth Alignment Workflow Version Tracking Enhancement.
April 2026
March 2026
6 Commits • 1 Features
Mar 1, 2026March 2026 (2026-03) — nf-core/modules: Deliveries focused on standardizing module interfaces, versioning, and output handling through topic-channel migrations across the codebase, with improvements to version handling and test stability.
March 2026
6 Commits • 1 Features
Mar 1, 2026March 2026 (2026-03) — nf-core/modules: Deliveries focused on standardizing module interfaces, versioning, and output handling through topic-channel migrations across the codebase, with improvements to version handling and test stability.
Activity
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Quality Metrics
Correctness83.0%
Maintainability80.0%
Architecture83.0%
Performance80.0%
AI Usage40.0%
Skills & Technologies
Programming Languages
GroovyNextflowYAML
Technical Skills
Nextflowbioinformaticsdata processingmodule developmenttestingworkflow developmentworkflow management
Repositories Contributed To
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