bioconda/bioconda-recipes
Mar 2026 – Jun 2026
2 Months active
Languages Used
PythonYAML
Technical Skills
bioinformaticsdependency managementpackage managementconda recipes
Jamie McGowan
PROFILE
Jamie Mcgowan
Contributed to the bioconda/bioconda-recipes repository by developing and maintaining packaging solutions for bioinformatics tools, focusing on reproducibility and dependency management. Delivered updates to the Busco_phylogenomics package, introducing new dependencies and run_exports to streamline dependency resolution and align with Bioconda standards. Authored a new conda recipe for lrSAGA, enabling long-read genome assembly workflows with comprehensive metadata and improved packaging hygiene. Emphasized transparent versioning, clear documentation, and adherence to packaging guidelines to reduce downstream conflicts. Utilized Python and YAML to manage package configurations, ensuring maintainable builds and supporting reproducible research environments for the bioinformatics community.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
2
Lines of code
56
Activity Months2
Your Network
639 peopleWork History
June 2026
1 Commits • 1 Features
Jun 1, 2026June 2026 monthly summary for bioconda/bioconda-recipes: Delivered lrSAGA recipe with metadata and dependencies, improved packaging hygiene, and updated version checks to ensure reproducible builds. No major bugs fixed; focused on feature delivery and maintainability.
1 Commits • 1 Features
Jun 1, 2026June 2026 monthly summary for bioconda/bioconda-recipes: Delivered lrSAGA recipe with metadata and dependencies, improved packaging hygiene, and updated version checks to ensure reproducible builds. No major bugs fixed; focused on feature delivery and maintainability.
June 2026
March 2026
1 Commits • 1 Features
Mar 1, 2026March 2026 monthly summary for bioconda/bioconda-recipes. Focused on delivering packaging improvements for Busco_phylogenomics and strengthening dependency management to enhance reproducibility and user experience. Key achievements include updating the Busco_phylogenomics package to version 20260305 with new dependencies and run_exports to streamline dependency resolution.
March 2026
1 Commits • 1 Features
Mar 1, 2026March 2026 monthly summary for bioconda/bioconda-recipes. Focused on delivering packaging improvements for Busco_phylogenomics and strengthening dependency management to enhance reproducibility and user experience. Key achievements include updating the Busco_phylogenomics package to version 20260305 with new dependencies and run_exports to streamline dependency resolution.
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
PythonYAML
Technical Skills
bioinformaticsconda recipesdependency managementpackage management
Repositories Contributed To
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