bioconda/bioconda-recipes
Oct 2024 – Jun 2026
8 Months active
Languages Used
PythonShellYAML
Technical Skills
BioinformaticsDevOpsPackage ManagementDependency ManagementBuild SystemsPython
Jon Belyeu
PROFILE
Jon Belyeu
Over eight months, contributed to the bioconda/bioconda-recipes repository by building and maintaining packaging solutions for bioinformatics visualization tools such as svtopovz, svtopo, Paraviewer, and Orographer. Focused on Python and YAML, the work included developing new recipes, updating package metadata, managing dependencies, and ensuring reproducible builds across environments. Addressed build stability by refining dependency management and correcting packaging manifests, while collaborating on cross-team releases. Enhanced user experience by enabling interactive data visualization and reliable installation workflows. The technical approach emphasized DevOps practices, version-controlled release engineering, and continuous integration, supporting the broader Bioconda ecosystem’s compatibility and maintainability goals.
Overall Statistics
Feature vs Bugs
78%Features
Repository Contributions
12Total
Bugs
2
Commits
12
Features
7
Lines of code
250
Activity Months8
Your Network
639 peopleWork History
June 2026
2 Commits • 1 Features
Jun 1, 2026June 2026 monthly summary for bioconda/bioconda-recipes. Focused on stabilizing the build pipeline and expanding compatibility to support downstream users in bioinformatics workflows. Delivered targeted feature upgrade to improve compatibility and maintainability, and fixed critical build stability issues to enable more reliable releases.
2 Commits • 1 Features
Jun 1, 2026June 2026 monthly summary for bioconda/bioconda-recipes. Focused on stabilizing the build pipeline and expanding compatibility to support downstream users in bioinformatics workflows. Delivered targeted feature upgrade to improve compatibility and maintainability, and fixed critical build stability issues to enable more reliable releases.
June 2026
April 2026
1 Commits • 1 Features
Apr 1, 2026April 2026 (2026-04) — Bioconda repo bioconda/bioconda-recipes focused on delivering a stable Paraviewer 1.0.0 release with improved compatibility and functionality. This release updates the paraviewer package to version 1.0.0 and adjusts dependencies to better align with downstream workflows, reducing build conflicts and enhancing user experience for end users.
April 2026
1 Commits • 1 Features
Apr 1, 2026April 2026 (2026-04) — Bioconda repo bioconda/bioconda-recipes focused on delivering a stable Paraviewer 1.0.0 release with improved compatibility and functionality. This release updates the paraviewer package to version 1.0.0 and adjusts dependencies to better align with downstream workflows, reducing build conflicts and enhancing user experience for end users.
March 2026
1 Commits • 1 Features
Mar 1, 2026March 2026 monthly summary for bioconda/bioconda-recipes focusing on delivering a visualization feature and reinforcing packaging/determinism. Key accomplishment: introduced Orographer BAM Alignment Visualization, enabling researchers to visualize BAM alignments via interactive HTML plots (Bokeh) directly from the Bioconda recipes. In addition to feature delivery, packaging integrity and reproducibility were strengthened through updated SHASUMs and integration into the Bioconda channel. Collaboration with a cross-team contributor is reflected in the commit log and PR tracking.
1 Commits • 1 Features
Mar 1, 2026March 2026 monthly summary for bioconda/bioconda-recipes focusing on delivering a visualization feature and reinforcing packaging/determinism. Key accomplishment: introduced Orographer BAM Alignment Visualization, enabling researchers to visualize BAM alignments via interactive HTML plots (Bokeh) directly from the Bioconda recipes. In addition to feature delivery, packaging integrity and reproducibility were strengthened through updated SHASUMs and integration into the Bioconda channel. Collaboration with a cross-team contributor is reflected in the commit log and PR tracking.
March 2026
September 2025
1 Commits • 1 Features
Sep 1, 2025Month: 2025-09 | Repository: bioconda/bioconda-recipes | Focus: packaging Paraviewer as a new Bioconda recipe, stabilizing dependencies, and expanding the Bioconda ecosystem. Key outputs included a new recipe with complete metadata, tests, and versioning support; fixed dependencies to ensure reproducible builds; collaboration across team.
September 2025
1 Commits • 1 Features
Sep 1, 2025Month: 2025-09 | Repository: bioconda/bioconda-recipes | Focus: packaging Paraviewer as a new Bioconda recipe, stabilizing dependencies, and expanding the Bioconda ecosystem. Key outputs included a new recipe with complete metadata, tests, and versioning support; fixed dependencies to ensure reproducible builds; collaboration across team.
July 2025
2 Commits
Jul 1, 2025July 2025 monthly summary focusing on packaging reliability and release engineering for the bioconda/bioconda-recipes repository. The work centered on correcting packaging metadata for the svtopo and svtopovz 0.3.0 release, ensuring accurate download URLs, tag formats, and manifest data to support reproducible builds and smooth downstream distribution.
2 Commits
Jul 1, 2025July 2025 monthly summary focusing on packaging reliability and release engineering for the bioconda/bioconda-recipes repository. The work centered on correcting packaging metadata for the svtopo and svtopovz 0.3.0 release, ensuring accurate download URLs, tag formats, and manifest data to support reproducible builds and smooth downstream distribution.
July 2025
March 2025
1 Commits • 1 Features
Mar 1, 2025Month: 2025-03. Focused on delivering a critical feature upgrade for svtopovz in the bioconda-recipes workflow, ensuring reliable installation, updated metadata, and preparation for downstream dependencies. The work aligns with improving package quality, reproducibility, and user experience for downstream users relying on the svtopovz 0.2.0 release.
March 2025
1 Commits • 1 Features
Mar 1, 2025Month: 2025-03. Focused on delivering a critical feature upgrade for svtopovz in the bioconda-recipes workflow, ensuring reliable installation, updated metadata, and preparation for downstream dependencies. The work aligns with improving package quality, reproducibility, and user experience for downstream users relying on the svtopovz 0.2.0 release.
November 2024
2 Commits • 1 Features
Nov 1, 2024November 2024: Delivered SVTopo package 0.1.3 in bioconda-recipes. Completed a clean release by updating meta.yaml and SHA checksum to ensure reproducible builds. The release consists of two commits: 'update svtopovz to 0.1.3 (#52165)' and 'Update SVTopo to v0.1.3 (#52210)'. No major bugs fixed in this scope. Impact: provides a stable, up-to-date SVTopo artifact for the Bioconda ecosystem, enabling downstream analyses and workflows. Skills demonstrated: packaging metadata management, versioned releases, checksum verification, and Git-based release hygiene.
2 Commits • 1 Features
Nov 1, 2024November 2024: Delivered SVTopo package 0.1.3 in bioconda-recipes. Completed a clean release by updating meta.yaml and SHA checksum to ensure reproducible builds. The release consists of two commits: 'update svtopovz to 0.1.3 (#52165)' and 'Update SVTopo to v0.1.3 (#52210)'. No major bugs fixed in this scope. Impact: provides a stable, up-to-date SVTopo artifact for the Bioconda ecosystem, enabling downstream analyses and workflows. Skills demonstrated: packaging metadata management, versioned releases, checksum verification, and Git-based release hygiene.
November 2024
October 2024
2 Commits • 1 Features
Oct 1, 2024October 2024 monthly summary for bioconda/bioconda-recipes: Delivered Bioconda packaging for two structural-variant visualization tools, svtopovz and svtopo, enabling installation, execution, and plotting of complex SVs within conda environments. This work is captured by two commits: 9a9fe19c8303b32d88bc3b2b8f6ea6e747225712 (Add svtopovz Python package) and e95bf9a3fbb296abf4dbbf4a89bfb77847cd08a7 (Add svtopo recipe). No major bugs fixed this month; primary impact is improved accessibility, reproducibility, and integration of SV visualization into standard run environments. Technologies demonstrated include Python packaging, Bioconda packaging, recipe/build script development, and version-controlled release engineering.
October 2024
2 Commits • 1 Features
Oct 1, 2024October 2024 monthly summary for bioconda/bioconda-recipes: Delivered Bioconda packaging for two structural-variant visualization tools, svtopovz and svtopo, enabling installation, execution, and plotting of complex SVs within conda environments. This work is captured by two commits: 9a9fe19c8303b32d88bc3b2b8f6ea6e747225712 (Add svtopovz Python package) and e95bf9a3fbb296abf4dbbf4a89bfb77847cd08a7 (Add svtopo recipe). No major bugs fixed this month; primary impact is improved accessibility, reproducibility, and integration of SV visualization into standard run environments. Technologies demonstrated include Python packaging, Bioconda packaging, recipe/build script development, and version-controlled release engineering.
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
PythonShellYAML
Technical Skills
BioinformaticsBuild SystemsDependency ManagementDevOpsPackage ManagementPythonYAMLbioinformaticscommand line toolsdata visualizationdependency managementpackage management
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