bioconda/bioconda-recipes
Nov 2024 – Jan 2026
3 Months active
Languages Used
YAMLPython
Technical Skills
Dependency ManagementPackage ManagementPython developmentbioinformaticspackage management
Jody Phelan
PROFILE
Jody Phelan
Jody Phelan contributed to the bioconda/bioconda-recipes repository by developing and maintaining packaging workflows for bioinformatics tools, focusing on reproducibility and compatibility. Over three months, Jody created a new Bioconda recipe for the IS6110 Insertion Detection Tool, ensuring robust installation and integration into M. tuberculosis NGS pipelines using Python and YAML. He stabilized dependencies for tb-profiler and pathogen-profiler by pinning versions, updating build metadata, and removing unused requirements, which improved build reliability and traceability. Jody’s work demonstrated strong skills in dependency management, package management, and release engineering, enabling reproducible builds and streamlined deployment for downstream analyses.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
4Total
Bugs
0
Commits
4
Features
3
Lines of code
56
Activity Months3
Your Network
549 peopleWork History
January 2026
1 Commits • 1 Features
Jan 1, 2026Month: 2026-01 — Delivered a new Bioconda recipe for the IS6110 Insertion Detection Tool, enabling seamless integration into TB NGS analysis pipelines. Implemented packaging best practices, including a meta.yaml with metadata, dependencies, and testing commands to ensure reliable installation and operation. Validated repository alignment with Bioconda standards and prepared for downstream workflow adoption across research groups.
1 Commits • 1 Features
Jan 1, 2026Month: 2026-01 — Delivered a new Bioconda recipe for the IS6110 Insertion Detection Tool, enabling seamless integration into TB NGS analysis pipelines. Implemented packaging best practices, including a meta.yaml with metadata, dependencies, and testing commands to ensure reliable installation and operation. Validated repository alignment with Bioconda standards and prepared for downstream workflow adoption across research groups.
January 2026
July 2025
1 Commits • 1 Features
Jul 1, 2025July 2025 monthly summary for bioconda/bioconda-recipes: Focused on maintenance and compatibility improvements. Delivered a dependency upgrade for pathogen-profiler in the meta.yaml and bumped the tb-profiler build number to ensure compatibility with the newer dependency, improving reliability and packaging traceability. The changes were implemented via commit a4a697d2504d6d8cb37bce25c0677a134749d84d with message 'update dependancy (#57735)'. No major bugs fixed this month; emphasis on release engineering and reproducible builds across the conda-forge ecosystem. Impact includes improved build reliability, traceability across releases, and smoother downstream analyses relying on updated pathogen-profiler versions. Technologies demonstrated include Conda packaging (meta.yaml), dependency/version management, build metadata handling, and release engineering.
July 2025
1 Commits • 1 Features
Jul 1, 2025July 2025 monthly summary for bioconda/bioconda-recipes: Focused on maintenance and compatibility improvements. Delivered a dependency upgrade for pathogen-profiler in the meta.yaml and bumped the tb-profiler build number to ensure compatibility with the newer dependency, improving reliability and packaging traceability. The changes were implemented via commit a4a697d2504d6d8cb37bce25c0677a134749d84d with message 'update dependancy (#57735)'. No major bugs fixed this month; emphasis on release engineering and reproducible builds across the conda-forge ecosystem. Impact includes improved build reliability, traceability across releases, and smoother downstream analyses relying on updated pathogen-profiler versions. Technologies demonstrated include Conda packaging (meta.yaml), dependency/version management, build metadata handling, and release engineering.
November 2024
2 Commits • 1 Features
Nov 1, 2024November 2024: Dependency stabilization for tb-profiler and pathogen-profiler in bioconda-recipes, delivering reproducible builds and improved stability for downstream analyses. Key actions included pinning exact versions for critical dependencies (e.g., delly 1.2.6), incrementing build numbers for pathogen-profiler recipes, updating pathogen-profiler, and removing unused dependencies (iqtree and usher) from requirements. These changes reduce build failures, shorten CI times, and improve traceability across the Bioconda channel. Commits: Pathogen profiler (#51865) and update dependancies (#52173).
2 Commits • 1 Features
Nov 1, 2024November 2024: Dependency stabilization for tb-profiler and pathogen-profiler in bioconda-recipes, delivering reproducible builds and improved stability for downstream analyses. Key actions included pinning exact versions for critical dependencies (e.g., delly 1.2.6), incrementing build numbers for pathogen-profiler recipes, updating pathogen-profiler, and removing unused dependencies (iqtree and usher) from requirements. These changes reduce build failures, shorten CI times, and improve traceability across the Bioconda channel. Commits: Pathogen profiler (#51865) and update dependancies (#52173).
November 2024
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Quality Metrics
Correctness90.0%
Maintainability90.0%
Architecture80.0%
Performance80.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
PythonYAML
Technical Skills
Dependency ManagementPackage ManagementPython developmentbioinformaticspackage management
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