wikipathways/wikipathways-database
Dec 2024 – Mar 2026
10 Months active
Languages Used
MarkdownTSVXMLCSVText
Technical Skills
Data CleanupData ManagementPathway CurationRepository MaintenanceDatabase AdministrationFile System Operations
Kristina Hanspers
PROFILE
Kristina Hanspers
Worked extensively on the wikipathways-database repository, focusing on data curation, cleanup, and documentation to improve dataset reliability and maintainability. Over ten months, delivered features such as deprecated pathway removal, reference data expansion, and filename standardization, using technologies like Git, Markdown, and CSV. Applied data management and database administration skills to align the repository with evolving governance policies, ensuring accurate, up-to-date pathway information for downstream analytics. Enhanced documentation and commit traceability supported onboarding and reproducibility. The work emphasized repository hygiene, reduced data drift, and improved user workflows, resulting in a more robust and accessible resource for the bioinformatics community.
Overall Statistics
Feature vs Bugs
75%Features
Repository Contributions
31Total
Bugs
3
Commits
31
Features
9
Lines of code
9,623
Activity Months10
Your Network
13 peopleSame Organization
@gladstone.ucsf.edu2
Shared Repositories
11
Work History
March 2026
1 Commits • 1 Features
Mar 1, 2026Monthly summary for 2026-03 focusing on key accomplishments, delivered features, fixes, impact, and technical proficiency. Highlights include CPTAC Community File Resources Expansion in wikipathways-database, with updated documentation. No major bugs fixed this month. The work improves resource discoverability and user workflow efficiency, strengthening our CPTAC integration and contributor experience.
1 Commits • 1 Features
Mar 1, 2026Monthly summary for 2026-03 focusing on key accomplishments, delivered features, fixes, impact, and technical proficiency. Highlights include CPTAC Community File Resources Expansion in wikipathways-database, with updated documentation. No major bugs fixed this month. The work improves resource discoverability and user workflow efficiency, strengthening our CPTAC integration and contributor experience.
March 2026
February 2026
4 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for wikipathways-database: Delivered dataset enhancements and quality improvements to CPTAC.txt, supporting cancer-pathway research and data accuracy. Increased dataset coverage with new entries and improved maintainability by removing obsolete entries. All changes tracked via Git commits, ensuring reproducibility and traceability.
February 2026
4 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for wikipathways-database: Delivered dataset enhancements and quality improvements to CPTAC.txt, supporting cancer-pathway research and data accuracy. Increased dataset coverage with new entries and improved maintainability by removing obsolete entries. All changes tracked via Git commits, ensuring reproducibility and traceability.
August 2025
1 Commits • 1 Features
Aug 1, 2025Month: 2025-08 Overview: Focused on expanding the CPTAC pathway dataset in the wikipathways-database repository by adding WP1449 and WP404 to CPTAC.txt. This update enhances data coverage for CPTAC-related analyses and improves downstream query results and reporting.
1 Commits • 1 Features
Aug 1, 2025Month: 2025-08 Overview: Focused on expanding the CPTAC pathway dataset in the wikipathways-database repository by adding WP1449 and WP404 to CPTAC.txt. This update enhances data coverage for CPTAC-related analyses and improves downstream query results and reporting.
August 2025
July 2025
3 Commits
Jul 1, 2025For 2025-07, delivered critical data integrity improvements in the wikipathways-database repo, focusing on removing obsolete pathway data and updating the lookup to reflect the current catalog. These changes reduce stale references, improve data accuracy, and strengthen data governance for downstream analytics and user-facing queries.
July 2025
3 Commits
Jul 1, 2025For 2025-07, delivered critical data integrity improvements in the wikipathways-database repo, focusing on removing obsolete pathway data and updating the lookup to reflect the current catalog. These changes reduce stale references, improve data accuracy, and strengthen data governance for downstream analytics and user-facing queries.
June 2025
3 Commits • 2 Features
Jun 1, 2025In June 2025, delivered targeted cleanups and documentation improvements in the wikipathways-database repo, aligning the project with current needs and improving maintainability and clarity for end users and contributors.
3 Commits • 2 Features
Jun 1, 2025In June 2025, delivered targeted cleanups and documentation improvements in the wikipathways-database repo, aligning the project with current needs and improving maintainability and clarity for end users and contributors.
June 2025
May 2025
3 Commits • 1 Features
May 1, 2025May 2025 monthly summary for wikipathways/wikipathways-database. Focused on enhancing reference data quality through data-only updates to identifiers in AOP, RareDiseases, and Micronutrients. Delivered three data-entry updates across AOP.txt, RareDiseases.txt, and Micronutrients.txt. Maintained full traceability with explicit commits and preserved code stability by not altering existing logic. Impact: improved data completeness and alignment with updated sources, enabling more accurate downstream analyses and reporting.
May 2025
3 Commits • 1 Features
May 1, 2025May 2025 monthly summary for wikipathways/wikipathways-database. Focused on enhancing reference data quality through data-only updates to identifiers in AOP, RareDiseases, and Micronutrients. Delivered three data-entry updates across AOP.txt, RareDiseases.txt, and Micronutrients.txt. Maintained full traceability with explicit commits and preserved code stability by not altering existing logic. Impact: improved data completeness and alignment with updated sources, enabling more accurate downstream analyses and reporting.
April 2025
8 Commits
Apr 1, 2025April 2025 monthly summary for wikipathways-database: Executed a focused data hygiene effort to remove deprecated pathways and refresh reference files, improving dataset reliability and downstream data quality. Changes reduce noise for users and automated pipelines and set the stage for ongoing data governance.
8 Commits
Apr 1, 2025April 2025 monthly summary for wikipathways-database: Executed a focused data hygiene effort to remove deprecated pathways and refresh reference files, improving dataset reliability and downstream data quality. Changes reduce noise for users and automated pipelines and set the stage for ongoing data governance.
April 2025
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 monthly summary focusing on key accomplishments and impact for wikipathways-database development efforts.
February 2025
1 Commits • 1 Features
Feb 1, 2025February 2025 monthly summary focusing on key accomplishments and impact for wikipathways-database development efforts.
January 2025
5 Commits • 1 Features
Jan 1, 2025January 2025 (2025-01) monthly summary for wikipathways-database: Focused on data governance and dataset cleanliness. Key feature delivered: removal of five deprecated pathways to improve accuracy and relevance. No major user-facing bugs were reported this month; data cleanup mitigates potential data quality issues. Overall impact includes a cleaner dataset, reduced maintenance, and improved trust in downstream analyses. Technologies/skills demonstrated include Git-driven data curation, precise directory deletions, and clear commit documentation for traceability.
5 Commits • 1 Features
Jan 1, 2025January 2025 (2025-01) monthly summary for wikipathways-database: Focused on data governance and dataset cleanliness. Key feature delivered: removal of five deprecated pathways to improve accuracy and relevance. No major user-facing bugs were reported this month; data cleanup mitigates potential data quality issues. Overall impact includes a cleaner dataset, reduced maintenance, and improved trust in downstream analyses. Technologies/skills demonstrated include Git-driven data curation, precise directory deletions, and clear commit documentation for traceability.
January 2025
December 2024
2 Commits • 1 Features
Dec 1, 2024December 2024 (2024-12): Delivered deprecated pathways cleanup in wikipathways/wikipathways-database by removing WP670 and WP16 to reflect non-maintained status and reduce maintenance surface. The work was implemented via two commits that delete the WP670 and WP16 directories, respectively. No major user-facing bugs fixed this month; cleanup reduces risk of stale references and data-model drift. Overall impact: cleaner repository, improved data integrity, and clearer alignment with maintenance policy and roadmap. Technologies/skills demonstrated: Git hygiene, impact analysis, and change management.
December 2024
2 Commits • 1 Features
Dec 1, 2024December 2024 (2024-12): Delivered deprecated pathways cleanup in wikipathways/wikipathways-database by removing WP670 and WP16 to reflect non-maintained status and reduce maintenance surface. The work was implemented via two commits that delete the WP670 and WP16 directories, respectively. No major user-facing bugs fixed this month; cleanup reduces risk of stale references and data-model drift. Overall impact: cleaner repository, improved data integrity, and clearer alignment with maintenance policy and roadmap. Technologies/skills demonstrated: Git hygiene, impact analysis, and change management.
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
CSVMarkdownTSVTextXML
Technical Skills
Data CleaningData CleanupData ManagementDatabase AdministrationDatabase MaintenanceDocumentationFile MaintenanceFile System OperationsPathway CurationRepository MaintenanceRepository Managementbioinformaticscommunity engagementdata managementfile editing
Repositories Contributed To
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