EXCEEDS logo
Exceeds
Martin Aryee

PROFILE

Martin Aryee

Contributed to the bioconda/bioconda-recipes repository by packaging the Foci-3D Toolkit for Transcription Factor Footprint Analysis, enabling researchers to perform transcription factor footprint analysis from Micro-C assays directly through Bioconda. The work involved developing and updating the foci-3d package using Python and YAML, managing dependencies, and integrating testing commands to ensure reliability. Addressed reproducibility by correcting the source checksum for version 0.2.0 and implemented run_exports for downstream compatibility. Demonstrated skills in package management, semantic versioning, and automated testing pipeline integration, resulting in a streamlined workflow that supports reproducible and efficient bioinformatics analysis for the research community.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

1Total
Bugs
0
Commits
1
Features
1
Lines of code
68
Activity Months1

Work History

April 2026

1 Commits • 1 Features

Apr 1, 2026

April 2026 monthly summary for Bioconda packaging work. Key feature delivered: added the Foci-3D Toolkit for Transcription Factor Footprint Analysis to bioconda-recipes, including its dependencies and testing commands. Major bug fix: corrected the source checksum for foci-3d 0.2.0 to ensure reproducible builds. Impact: enables researchers to perform transcription factor footprint analysis from Micro-C assays directly via Bioconda, improving reproducibility and accelerating analysis workflows. Technologies/skills demonstrated: packaging automation in Bioconda, dependency management, semantic versioning, checksum validation, and testing pipeline integration.

Activity

Loading activity data...

Quality Metrics

Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%

Skills & Technologies

Programming Languages

PythonYAML

Technical Skills

Python developmentbioinformaticspackage management

Repositories Contributed To

1 repo

Overview of all repositories you've contributed to across your timeline

bioconda/bioconda-recipes

Apr 2026 Apr 2026
1 Month active

Languages Used

PythonYAML

Technical Skills

Python developmentbioinformaticspackage management