nf-core/modules
Apr 2025 – Mar 2026
2 Months active
Languages Used
nfymlNextflow
Technical Skills
BioinformaticsGenome AnalysisNextflowRNA-Seq Analysisbioinformaticsdata processing
Martín E. García Solá
PROFILE
Martín E. García Solá
Contributed to the nf-core/modules repository by developing an end-to-end STAR-Fusion Genome Resources Builder, automating the download and preprocessing of diverse biological data formats for fusion calling workflows. Leveraged Nextflow and YAML to implement configuration files, scripts, and comprehensive test suites, ensuring reproducibility and compatibility with STAR-Fusion analyses. Additionally, delivered a unified versioning overhaul for BAMTools, PLINK, and COPTR modules, introducing dynamic version capture, enriched metadata, and standardized test snapshots to improve auditability and user-facing transparency. Focused on robust workflow management and data processing, the work enhanced pipeline readiness, version tracking, and continuous integration reliability across multiple bioinformatics tools.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
4Total
Bugs
0
Commits
4
Features
2
Lines of code
2,913
Activity Months2
Work History
March 2026
3 Commits • 1 Features
Mar 1, 2026March 2026 nf-core/modules delivered a consolidated versioning overhaul across BAMTools, PLINK, and COPTR, enabling dynamic version capture, enriched metadata, and standardized test snapshots. This work improves reproducibility, auditability, and user-facing visibility of tool versions, while tightening CI/test reliability and reducing debugging time for version-related issues.
3 Commits • 1 Features
Mar 1, 2026March 2026 nf-core/modules delivered a consolidated versioning overhaul across BAMTools, PLINK, and COPTR, enabling dynamic version capture, enriched metadata, and standardized test snapshots. This work improves reproducibility, auditability, and user-facing visibility of tool versions, while tightening CI/test reliability and reducing debugging time for version-related issues.
March 2026
April 2025
1 Commits • 1 Features
Apr 1, 2025April 2025: Launched the STAR-Fusion Genome Resources Builder in nf-core/modules, providing an end-to-end module to build genome resources for STAR-Fusion analyses. The module includes configuration files, scripts, and tests to automate downloading and processing diverse data formats required for fusion calling, improving pipeline readiness and reproducibility.
April 2025
1 Commits • 1 Features
Apr 1, 2025April 2025: Launched the STAR-Fusion Genome Resources Builder in nf-core/modules, providing an end-to-end module to build genome resources for STAR-Fusion analyses. The module includes configuration files, scripts, and tests to automate downloading and processing diverse data formats required for fusion calling, improving pipeline readiness and reproducibility.
Activity
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Quality Metrics
Correctness97.6%
Maintainability80.0%
Architecture85.0%
Performance80.0%
AI Usage40.0%
Skills & Technologies
Programming Languages
Nextflownfyml
Technical Skills
BioinformaticsGenome AnalysisNextflowRNA-Seq Analysisbioinformaticsdata processingworkflow management
Repositories Contributed To
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