Worked on the APPFL/APPFL repository to deliver a comprehensive update to the GWAS Pipeline documentation, focusing on improving onboarding and reproducibility for bioinformatics workflows. Enhanced the README using Markdown to provide a clear overview of pipeline architecture, data inputs, and configuration steps required for end-to-end analysis. The documentation now serves as a centralized reference, aligning with current data flows and operational requirements to support maintainability. This update laid the groundwork for future automation and tutorial enhancements, ensuring that new users can efficiently set up and run the pipeline. No bug fixes were addressed during this period, emphasizing documentation quality.