Clinical-Genomics/scout
Oct 2024 – Jun 2026
10 Months active
Languages Used
HTMLJavaScriptJinjaPythonMarkdownSQLYAML
Technical Skills
API developmentCode FormattingFlaskHTMLHTML templatingJavaScript
molucorner
PROFILE
Molucorner
Over ten months, this developer enhanced the Clinical-Genomics/scout repository by building and refining clinical genomics features, including ClinGen-CGC-VICC and ESCAT variant classification systems, HRD status integration, and external resource linking for cancer diagnostics. Their work combined Python, JavaScript, and MongoDB to deliver robust backend data models, rule-based classification logic, and user-facing workflows that support accurate variant interpretation and reporting. They addressed critical bugs affecting ACMG and CCV classification accuracy, improved changelog management, and expanded test coverage to ensure data integrity. Their approach emphasized maintainability, traceability, and alignment with evolving clinical guidelines, strengthening Scout’s clinical decision support capabilities.
Overall Statistics
Feature vs Bugs
67%Features
Repository Contributions
40Total
Bugs
4
Commits
40
Features
8
Lines of code
2,460
Activity Months10
Your Network
7 peopleSame Organization
@regionvasterbotten.se1
Shared Repositories
6
Work History
June 2026
1 Commits
Jun 1, 2026June 2026 monthly summary focusing on DevOps and data integrity improvements for Clinical-Genomics/scout. Delivered a critical bug fix in CCV classification to include modifiers when submitting data to the database, improving classification accuracy and data integrity. Updated changelog and ensured traceability of the fix.
1 Commits
Jun 1, 2026June 2026 monthly summary focusing on DevOps and data integrity improvements for Clinical-Genomics/scout. Delivered a critical bug fix in CCV classification to include modifiers when submitting data to the database, improving classification accuracy and data integrity. Updated changelog and ensured traceability of the fix.
June 2026
May 2026
1 Commits
May 1, 2026Month: 2026-05 — Clinical-Genomics/scout: Delivered a critical bug fix and improved test coverage, preserving the correctness of ACMG classifications. Key changes ensure 'benign' is not overwritten by 'likely benign' and confirm classification accuracy through regression tests. Impact: prevents misinterpretation in clinical reports, improves data integrity and trust in automated ACMG workflows. Technologies/skills demonstrated include regression testing, changelog maintenance, and Git-based collaboration.
May 2026
1 Commits
May 1, 2026Month: 2026-05 — Clinical-Genomics/scout: Delivered a critical bug fix and improved test coverage, preserving the correctness of ACMG classifications. Key changes ensure 'benign' is not overwritten by 'likely benign' and confirm classification accuracy through regression tests. Impact: prevents misinterpretation in clinical reports, improves data integrity and trust in automated ACMG workflows. Technologies/skills demonstrated include regression testing, changelog maintenance, and Git-based collaboration.
September 2025
1 Commits • 1 Features
Sep 1, 2025September 2025: Delivered the ESCAT Classification System for Cancer Variants in Scout. Expanded tiering to include ESCAT tiers alongside AMP tiers, with updates to the database adapters, constants, and user interface to support the new classification. This change enhances variant prioritization, aligns Scout with ESCAT guidelines, and establishes a foundation for future classification expansions.
1 Commits • 1 Features
Sep 1, 2025September 2025: Delivered the ESCAT Classification System for Cancer Variants in Scout. Expanded tiering to include ESCAT tiers alongside AMP tiers, with updates to the database adapters, constants, and user interface to support the new classification. This change enhances variant prioritization, aligns Scout with ESCAT guidelines, and establishes a foundation for future classification expansions.
September 2025
August 2025
1 Commits
Aug 1, 2025August 2025: Delivered a critical bug fix in the Scout project to align ClinGen-CGC-VICC variant classification with Horak et al. guidelines, resolving inconsistencies in CCV_POTENTIAL_CONFLICTS. The change enhances accuracy and consistency of variant interpretation across workflows and reinforces governance around conflict rules. All work was performed in the Clinical-Genomics/scout repository with a clearly traceable commit and linked to the related guidance update.
August 2025
1 Commits
Aug 1, 2025August 2025: Delivered a critical bug fix in the Scout project to align ClinGen-CGC-VICC variant classification with Horak et al. guidelines, resolving inconsistencies in CCV_POTENTIAL_CONFLICTS. The change enhances accuracy and consistency of variant interpretation across workflows and reinforces governance around conflict rules. All work was performed in the Clinical-Genomics/scout repository with a clearly traceable commit and linked to the related guidance update.
March 2025
1 Commits • 1 Features
Mar 1, 2025March 2025 monthly summary for Clinical-Genomics/scout: Implemented an external resource link to cancerhotspots.org on the variant page for cancer cases, updated the changelog, and ensured gene linking remains correct with the new resource. No major defects fixed this month; all work focused on feature integration and validation. The changes enhance data accessibility, improve decision support, and strengthen traceability through explicit commit documentation.
1 Commits • 1 Features
Mar 1, 2025March 2025 monthly summary for Clinical-Genomics/scout: Implemented an external resource link to cancerhotspots.org on the variant page for cancer cases, updated the changelog, and ensured gene linking remains correct with the new resource. No major defects fixed this month; all work focused on feature integration and validation. The changes enhance data accessibility, improve decision support, and strengthen traceability through explicit commit documentation.
March 2025
February 2025
2 Commits • 1 Features
Feb 1, 2025February 2025: Delivered a configurable HRD (Homologous Recombination Deficiency) status feature for cancer cases in the Scout repository, enabling clinicians to toggle HRD checks and view HRD status within diagnostics. This involved configuration changes, data model updates, and UI enhancements to surface actionable diagnostic information. The HRD capability was also added to the demo cancer dataset to illustrate its usage in real scenarios.
February 2025
2 Commits • 1 Features
Feb 1, 2025February 2025: Delivered a configurable HRD (Homologous Recombination Deficiency) status feature for cancer cases in the Scout repository, enabling clinicians to toggle HRD checks and view HRD status within diagnostics. This involved configuration changes, data model updates, and UI enhancements to surface actionable diagnostic information. The HRD capability was also added to the demo cancer dataset to illustrate its usage in real scenarios.
January 2025
3 Commits • 2 Features
Jan 1, 2025January 2025 monthly summary for Clinical-Genomics/scout: Implemented and visible CCV score in case reports, enhanced case report presentation, and improved UI readability; documented changes in changelog; all changes are focused on strengthening clinical decision support and reporting accuracy. The work was delivered with clean commits, small scope, and clear traceability, laying groundwork for future CCV analytics and broader adoption.
3 Commits • 2 Features
Jan 1, 2025January 2025 monthly summary for Clinical-Genomics/scout: Implemented and visible CCV score in case reports, enhanced case report presentation, and improved UI readability; documented changes in changelog; all changes are focused on strengthening clinical decision support and reporting accuracy. The work was delivered with clean commits, small scope, and clear traceability, laying groundwork for future CCV analytics and broader adoption.
January 2025
December 2024
1 Commits
Dec 1, 2024December 2024 monthly summary for Clinical-Genomics/scout: Focused on improving release notes quality and ensuring changelog accuracy. A changelog fix added an unreleased ClinGen-CGC-VICC oncogenicity classification entry and removed duplicates under 4.92, improving release clarity for stakeholders.
December 2024
1 Commits
Dec 1, 2024December 2024 monthly summary for Clinical-Genomics/scout: Focused on improving release notes quality and ensuring changelog accuracy. A changelog fix added an unreleased ClinGen-CGC-VICC oncogenicity classification entry and removed duplicates under 4.92, improving release clarity for stakeholders.
November 2024
9 Commits • 1 Features
Nov 1, 2024November 2024 monthly summary focused on ClinGen-CGC-VICC (CCV) classification enhancements in Scout, with backend, UI, and test coverage improvements. Delivered end-to-end CCV classification support in case reports, plus UI refinements and documentation updates that improve data integrity and user experience.
9 Commits • 1 Features
Nov 1, 2024November 2024 monthly summary focused on ClinGen-CGC-VICC (CCV) classification enhancements in Scout, with backend, UI, and test coverage improvements. Delivered end-to-end CCV classification support in case reports, plus UI refinements and documentation updates that improve data integrity and user experience.
November 2024
October 2024
20 Commits • 2 Features
Oct 1, 2024October 2024 monthly summary focusing on business value and technical achievements for the Scout project (Clinical-Genomics/scout). Delivered a comprehensive ClinGen-CGC-VIGG backbone and a streamlined evaluation workflow, enabling scalable, governance-aligned variant classifications and end-to-end evaluation management. The work combined backend data modeling, rule-based classification, and a user-facing evaluation experience, with targeted fixes to ensure correctness and stability.
October 2024
20 Commits • 2 Features
Oct 1, 2024October 2024 monthly summary focusing on business value and technical achievements for the Scout project (Clinical-Genomics/scout). Delivered a comprehensive ClinGen-CGC-VIGG backbone and a streamlined evaluation workflow, enabling scalable, governance-aligned variant classifications and end-to-end evaluation management. The work combined backend data modeling, rule-based classification, and a user-facing evaluation experience, with targeted fixes to ensure correctness and stability.
Activity
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Quality Metrics
Correctness90.6%
Maintainability89.2%
Architecture87.8%
Performance87.0%
AI Usage21.6%
Skills & Technologies
Programming Languages
HTMLJavaScriptJinjaMarkdownPythonSQLYAML
Technical Skills
API DevelopmentAPI developmentBack-end DevelopmentBackend DevelopmentChangelog ManagementClinical GenomicsCode FormattingCode RefactoringConfiguration ManagementData IntegrationData ManagementData ModelingDatabase ManagementDocumentationFlask
Repositories Contributed To
Overview of all repositories you've contributed to across your timeline