bioconda/bioconda-recipes
Apr 2025 – Mar 2026
2 Months active
Languages Used
YAMLPythonRustShell
Technical Skills
Conda PackagingPackage ManagementPython developmentRust developmentcross-compilationpackage management
Jon Palmer
PROFILE
Jon Palmer
Contributed to the bioconda/bioconda-recipes repository by developing and packaging two scientific tools over a two-month period. Delivered the pytantan package, implementing Cython bindings for the Tantan tool to enable efficient repeat identification in DNA and protein sequences, and enhanced reproducibility through comprehensive testing and metadata in the conda recipe. Later, created a cross-platform recipe for Annorefine, adding arm64 cross-compilation support for macOS and Linux, and streamlined the build process by leveraging conda-build and maturin. Work involved Python, Rust, and shell scripting, with a focus on improving build reliability, maintainability, and onboarding for researchers and developers.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
2
Lines of code
137
Activity Months2
Your Network
639 peopleWork History
March 2026
1 Commits • 1 Features
Mar 1, 2026March 2026: Delivered cross-platform Annorefine recipe v2026.2.22 for bioconda-recipes with arm64 cross-compilation support, enabling reliable macOS/Linux builds and streamlining developer workflow. Updated dependencies and build strategy to improve reliability and maintainability across platforms.
1 Commits • 1 Features
Mar 1, 2026March 2026: Delivered cross-platform Annorefine recipe v2026.2.22 for bioconda-recipes with arm64 cross-compilation support, enabling reliable macOS/Linux builds and streamlining developer workflow. Updated dependencies and build strategy to improve reliability and maintainability across platforms.
March 2026
April 2025
1 Commits • 1 Features
Apr 1, 2025April 2025: Delivered the pytantan package addition to bioconda-recipes with a complete conda recipe (meta.yaml) including build/host/run requirements, tests, and about information. Implemented a Cython binding for the Tantan tool to enable efficient repeats identification in DNA and protein sequences. Strengthened packaging quality with testing hooks and clear metadata to improve reproducibility. This work lowers onboarding friction for researchers and accelerates adoption of pytantan in user workflows.
April 2025
1 Commits • 1 Features
Apr 1, 2025April 2025: Delivered the pytantan package addition to bioconda-recipes with a complete conda recipe (meta.yaml) including build/host/run requirements, tests, and about information. Implemented a Cython binding for the Tantan tool to enable efficient repeats identification in DNA and protein sequences. Strengthened packaging quality with testing hooks and clear metadata to improve reproducibility. This work lowers onboarding friction for researchers and accelerates adoption of pytantan in user workflows.
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Quality Metrics
Correctness90.0%
Maintainability90.0%
Architecture90.0%
Performance90.0%
AI Usage30.0%
Skills & Technologies
Programming Languages
PythonRustShellYAML
Technical Skills
Conda PackagingPackage ManagementPython developmentRust developmentcross-compilationpackage managementshell scripting
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