longTREC/summer_school
Jun 2025 – Jul 2025
2 Months active
Languages Used
PythonShellJupyter NotebookMarkdown
Technical Skills
BioinformaticsData AnalysisGenomicsJupyter NotebooksRNA-Seq AnalysisData Visualization
nadjano
PROFILE
Nadjano
Nina Nolte developed a reproducible allele-specific expression analysis workflow for potato genomics in the longTREC/summer_school repository. She implemented the workflow as a Jupyter Notebook using Python, focusing on structured analysis of transcript metadata and accurate extraction of allele-specific counts from mapped reads, with attention to avoiding UTR length bias. Her work included detailed documentation, setup guidance, and quality control visualizations, which improved onboarding and analysis readiness for new users. By enhancing usability and reproducibility through environment setup instructions and code refactoring, Nina delivered a robust, well-documented tool that supports efficient, data-driven research in bioinformatics and RNA-Seq analysis.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
6Total
Bugs
0
Commits
6
Features
2
Lines of code
6,132
Activity Months2
Your Network
32 people
Work History
July 2025
5 Commits • 1 Features
Jul 1, 2025In July 2025, delivered substantial usability, documentation, and reproducibility improvements for the Allele-Specific Expression Analysis Notebook in the longTREC/summer_school project. The changes enhance analysis readiness for potato ASE data and reduce onboarding time for new users by clarifying setup, column definitions, and QC visualization.
5 Commits • 1 Features
Jul 1, 2025In July 2025, delivered substantial usability, documentation, and reproducibility improvements for the Allele-Specific Expression Analysis Notebook in the longTREC/summer_school project. The changes enhance analysis readiness for potato ASE data and reduce onboarding time for new users by clarifying setup, column definitions, and QC visualization.
July 2025
June 2025
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly summary for longTREC/summer_school: Implemented a reproducible potato allele-specific expression analysis workflow via a Jupyter notebook, enabling structured analysis of transcript metadata and CDS-focused allele counts. This work enhances data-driven insights in potato genomics and improves research efficiency and onboarding for new analysts.
June 2025
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly summary for longTREC/summer_school: Implemented a reproducible potato allele-specific expression analysis workflow via a Jupyter notebook, enabling structured analysis of transcript metadata and CDS-focused allele counts. This work enhances data-driven insights in potato genomics and improves research efficiency and onboarding for new analysts.
Activity
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Quality Metrics
Correctness86.6%
Maintainability86.6%
Architecture86.6%
Performance80.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
Jupyter NotebookMarkdownPythonShell
Technical Skills
BioinformaticsData AnalysisData VisualizationEnvironment SetupGenomicsJupyter NotebookJupyter NotebooksPackage ManagementPythonRNA-Seq Analysis
Repositories Contributed To
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