bioconda/bioconda-recipes
May 2025 – Feb 2026
4 Months active
Languages Used
ShellYAML
Technical Skills
BioinformaticsDependency ManagementDevOpsPackage ManagementBuild ScriptingPython
riccabolla
PROFILE
Riccabolla
Worked on the bioconda/bioconda-recipes repository to deliver and maintain bioinformatics software packaging, focusing on PCNE and StaphSCAN tools. Over four months, developed end-to-end Bioconda recipes, managed dependencies, and implemented build scripting using Shell, YAML, and Python. Upgraded PCNE through multiple versions, adding new R scripts, updating metadata, and refining build processes to ensure reproducible and reliable installations. Addressed packaging quality by aligning with Bioconda guidelines, improving maintainability, and supporting downstream data pipelines. The work emphasized robust dependency management, reproducible builds, and smooth integration into bioinformatics workflows, contributing to the reliability and usability of packaged scientific software.
Overall Statistics
Feature vs Bugs
80%Features
Repository Contributions
5Total
Bugs
1
Commits
5
Features
4
Lines of code
125
Activity Months4
Your Network
597 peopleShared Repositories
597
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JulianMember
shguanMember
Matthew BerkeleyMember
LidongMember
Jingxian FUMember
RayMember
Work History
February 2026
1 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for bioconda/bioconda-recipes: Focused on delivering a new StaphSCAN Bioconda Recipe and essential packaging improvements to support reliable installation, reproducibility, and smoother downstream usage in the Bioconda ecosystem.
1 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for bioconda/bioconda-recipes: Focused on delivering a new StaphSCAN Bioconda Recipe and essential packaging improvements to support reliable installation, reproducibility, and smoother downstream usage in the Bioconda ecosystem.
February 2026
August 2025
1 Commits • 1 Features
Aug 1, 2025August 2025 delivered a key feature upgrade for bioconda/bioconda-recipes: PCNE Package Version 2.0.0 Upgrade. The upgrade modernizes the PCNE package to v2.0.0, with updates to build scripts and metadata, addition of new executable scripts and R files, updates to source URLs and checksums, and adjustments to the dependency list to reflect the new version's requirements. The changes are recorded in commit 93142ea9df97e287c37c88e546b9f0ddda1c7c44 ("Update PCNE to v2.0.0 (#58709)").
August 2025
1 Commits • 1 Features
Aug 1, 2025August 2025 delivered a key feature upgrade for bioconda/bioconda-recipes: PCNE Package Version 2.0.0 Upgrade. The upgrade modernizes the PCNE package to v2.0.0, with updates to build scripts and metadata, addition of new executable scripts and R files, updates to source URLs and checksums, and adjustments to the dependency list to reflect the new version's requirements. The changes are recorded in commit 93142ea9df97e287c37c88e546b9f0ddda1c7c44 ("Update PCNE to v2.0.0 (#58709)").
June 2025
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly summary for bioconda/bioconda-recipes focusing on features delivered and package maintenance. Key changes include the addition of a GC Correction R Script to the PCNE package and a build number increment as part of routine maintenance. This work is tied to the commit 17c4f4cb6e2ef4dcc3554081c74cbed5ba97dc4d, labeled 'Update PCNE v1.0.0 (#57091)'.
1 Commits • 1 Features
Jun 1, 2025June 2025 monthly summary for bioconda/bioconda-recipes focusing on features delivered and package maintenance. Key changes include the addition of a GC Correction R Script to the PCNE package and a build number increment as part of routine maintenance. This work is tied to the commit 17c4f4cb6e2ef4dcc3554081c74cbed5ba97dc4d, labeled 'Update PCNE v1.0.0 (#57091)'.
June 2025
May 2025
2 Commits • 1 Features
May 1, 2025May 2025 monthly summary focusing on Bioconda packaging for PCNE in the bioconda-recipes repository. Delivered end-to-end packaging readiness for PCNE with initial release and subsequent dependency hardening, enabling broader deployment in bioinformatics workflows.
May 2025
2 Commits • 1 Features
May 1, 2025May 2025 monthly summary focusing on Bioconda packaging for PCNE in the bioconda-recipes repository. Delivered end-to-end packaging readiness for PCNE with initial release and subsequent dependency hardening, enabling broader deployment in bioinformatics workflows.
Activity
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Quality Metrics
Correctness88.0%
Maintainability88.0%
Architecture84.0%
Performance76.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
ShellYAML
Technical Skills
BioinformaticsBuild ScriptingDependency ManagementDevOpsPackage ManagementPythonbioinformaticspackage management
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