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Salma Mbarki

PROFILE

Salma Mbarki

Worked on bioinformatics tooling for Flavobacterium psychrophilum, delivering two FlavoTyper releases in the bioconda/bioconda-recipes repository and introducing FlavoTyper to galaxyproject/tools-iuc. Enhanced package management and dependency handling using Python, YAML, and XML, focusing on reproducible builds and downstream compatibility. Improved build instructions and added run_exports to streamline maintenance and ensure reliable serotyping workflows. Upgraded FlavoTyper from version 0.4.0 to 0.5.0, incorporating expanded input format support, parameter refactoring, and user-facing enhancements. Collaborated across repositories, aligning with planemo-format standards and integrating review feedback to improve code quality, maintainability, and genome assembly analysis capabilities for researchers.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

3Total
Bugs
0
Commits
3
Features
3
Lines of code
255
Activity Months2

Work History

June 2026

2 Commits • 2 Features

Jun 1, 2026

June 2026 monthly summary focusing on key business value and technical achievements across two repos: bioconda/bioconda-recipes and galaxyproject/tools-iuc.

May 2026

1 Commits • 1 Features

May 1, 2026

May 2026 monthly summary for bioconda/bioconda-recipes: Delivery of flavotyper 0.4.0 release with build enhancements to improve serotyping of Flavobacterium psychrophilum, plus packaging hygiene improvements (run_exports) to ensure downstream compatibility. Implemented via commit 263b1b1ba01f0eff7285a16aadab57a1edbb4104 (#65073), co-authored by Salma Mbarki and Redmar van den Berg.

Activity

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Quality Metrics

Correctness100.0%
Maintainability93.4%
Architecture100.0%
Performance93.4%
AI Usage20.0%

Skills & Technologies

Programming Languages

XMLYAML

Technical Skills

Pythonbioinformaticsdependency managementgenome analysispackage managementsoftware development

Repositories Contributed To

2 repos

Overview of all repositories you've contributed to across your timeline

bioconda/bioconda-recipes

May 2026 Jun 2026
2 Months active

Languages Used

YAML

Technical Skills

Pythonbioinformaticspackage managementdependency management

galaxyproject/tools-iuc

Jun 2026 Jun 2026
1 Month active

Languages Used

XML

Technical Skills

bioinformaticsgenome analysissoftware development