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sam-fogarty

PROFILE

Sam-fogarty

Samuel Fogarty developed robust data processing and calibration workflows for the DUNE/ndlar_flow and DUNE/larnd-sim repositories, focusing on detector simulation and data quality. He overhauled pedestal processing by refactoring the architecture into modular Python classes, enabling multi-file HDF5 input and streamlined JSON output. Leveraging skills in Python, shell scripting, and HDF5, Samuel automated pedestal data generation and improved configuration management, enhancing throughput and reproducibility. He also introduced explicit out-of-bounds protection in CUDA-based track pixel mapping for DUNE/larnd-sim, reducing simulation errors. His work demonstrated depth in scientific computing, workflow automation, and maintainable code organization for large-scale detector data pipelines.

Overall Statistics

Feature vs Bugs

67%Features

Repository Contributions

12Total
Bugs
2
Commits
12
Features
4
Lines of code
890
Activity Months3

Work History

July 2025

3 Commits • 2 Features

Jul 1, 2025

July 2025 progress on DUNE/ndlar_flow focused on architectural refactor and automation to scale pedestal processing. Implemented a pedestal processing overhaul into separate classes for histogram generation and pedestal JSON creation, enabling multi-file HDF5 pedestal inputs, with updated configuration and documentation reflecting the new architecture. Added shell-based automation for pedestal data generation for 2x2 and FSD detectors using h5flow, including defined input directories, file lists, outputs, and a workflow YAML. These changes improve throughput, reproducibility, and scalability of the data-processing pipeline.

June 2025

8 Commits • 2 Features

Jun 1, 2025

June 2025 focused on delivering core data quality improvements and a streamlined pedestal workflow in DUNE/ndlar_flow. Key features include a Pixel Unique ID generation overhaul that introduces a per-pixel ID mapping using a LUT (later migrated to a dedicated function) and consolidation of ID defaults for pedestal, ADC counts, and gain; a new GeneratePedestals workflow that computes channel pedestals from LArPix data, outputs JSON and HDF5, and is integrated with H5Flow; and targeted calibration fixes addressing prompt hit handling and ADC-to-millivolt calculations. These efforts improve data consistency, processing throughput, and maintainability, enabling more reliable detector calibration, faster onboarding of new data, and clearer documentation.

April 2025

1 Commits

Apr 1, 2025

April 2025 monthly summary for DUNE/larnd-sim: Implemented an important robustness enhancement by adding explicit out-of-bounds protection in the track pixel mapping code. The boundary checks guard get_track_pixel_map and get_track_pixel_map2 against indexing errors when calculated indices exceed the unique_pix array, significantly reducing crash risk and data corruption in simulations.

Activity

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Quality Metrics

Correctness86.8%
Maintainability88.4%
Architecture83.2%
Performance83.4%
AI Usage20.0%

Skills & Technologies

Programming Languages

BashPythonRSTYAML

Technical Skills

CUDACalibrationCode OrganizationCode RefactoringConfiguration ManagementData EngineeringData ProcessingDetector SimulationDocumentationGeometry ProcessingHDF5JSONNumPyPerformance OptimizationPython

Repositories Contributed To

2 repos

Overview of all repositories you've contributed to across your timeline

DUNE/ndlar_flow

Jun 2025 Jul 2025
2 Months active

Languages Used

PythonRSTYAMLBash

Technical Skills

CalibrationCode OrganizationConfiguration ManagementData EngineeringData ProcessingDetector Simulation

DUNE/larnd-sim

Apr 2025 Apr 2025
1 Month active

Languages Used

Python

Technical Skills

CUDAPerformance Optimization

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