EBI-Metagenomics/nf-modules
Feb 2026 – Feb 2026
1 Month active
Languages Used
NextflowYAML
Technical Skills
NextflowNextflow scriptingbioinformaticscode style improvementmaintainabilitysoftware development
SantiagoSanchezF
PROFILE
Santiagosanchezf
Worked on the EBI-Metagenomics/nf-modules repository to enhance the combined gene caller workflow by introducing explicit versioning controls for Pyrodigal and FragGeneScanRS, enabling users to specify tool versions for improved reproducibility and compatibility. Addressed test reliability by refining test pattern and input handling, ensuring more robust validation of gene caller functionality. Focused on code quality by performing targeted cleanup, such as removing trailing spaces, to improve readability and maintainability without altering core logic. Utilized Nextflow and YAML for workflow management and scripting, applying bioinformatics expertise and best practices in software development, testing, and maintainability throughout the project.
Overall Statistics
Feature vs Bugs
67%Features
Repository Contributions
5Total
Bugs
1
Commits
5
Features
2
Lines of code
60
Activity Months1
Work History
February 2026
5 Commits • 2 Features
Feb 1, 2026February 2026 (2026-02): nf-modules delivered versioning controls for the combined gene caller, improved test reliability through test pattern/input handling fixes, and performed targeted code quality cleanup. These changes enhance reproducibility, stability, and maintainability of the gene-calling workflow, with explicit parameterization for tool versions and stronger validation.
5 Commits • 2 Features
Feb 1, 2026February 2026 (2026-02): nf-modules delivered versioning controls for the combined gene caller, improved test reliability through test pattern/input handling fixes, and performed targeted code quality cleanup. These changes enhance reproducibility, stability, and maintainability of the gene-calling workflow, with explicit parameterization for tool versions and stronger validation.
February 2026
Activity
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Quality Metrics
Correctness96.0%
Maintainability92.0%
Architecture92.0%
Performance92.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
NextflowYAML
Technical Skills
NextflowNextflow scriptingbioinformaticscode style improvementmaintainabilitysoftware developmenttestingworkflow management
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