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Seth A Sharp

PROFILE

Seth A Sharp

Developed and delivered the prsedm Diabetes Polygenic Risk Scoring package for the bioconda/bioconda-recipes repository, expanding diabetes analytics tooling for the research community. The work involved creating a comprehensive Conda recipe with precise build and runtime dependencies, robust test commands, and updated metadata in YAML to ensure reproducible deployments. Addressed packaging reliability by correcting the build number, source URL, and implementing run_exports for clean dependency resolution. Leveraged Python and bioinformatics expertise to automate packaging and streamline dependency management. This contribution enabled researchers to deploy polygenic risk scoring workflows in reproducible Conda environments, supporting faster and more reliable diabetes genomics research pipelines.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

1Total
Bugs
0
Commits
1
Features
1
Lines of code
43
Activity Months1

Work History

April 2026

1 Commits • 1 Features

Apr 1, 2026

April 2026 monthly summary for bioconda/bioconda-recipes. Key accomplishment: delivered a new Diabetes Polygenic Risk Scoring package (prsedm) as part of the diabetes analytics tooling in Bioconda, with complete build and runtime dependencies and test commands. This work broadened Bioconda's diabetes research capabilities and accelerated reproducible analysis in research pipelines. Major packaging fixes included correcting the recipe build number and source URL, and adding run_exports to the prsedm recipe to ensure clean dependency resolution. Updated metadata (meta.yaml) to reflect new dependencies and outputs. Overall impact: expanded business value by enabling researchers to deploy PRS workflows in reproducible Conda environments, improved packaging reliability, and contributed to faster, more reliable diabetes genomics research pipelines. Technologies/skills demonstrated: Conda recipe development, dependency management, packaging automation, metadata troubleshooting, test orchestration, and cross-team collaboration.

Activity

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Quality Metrics

Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%

Skills & Technologies

Programming Languages

YAML

Technical Skills

Pythonbioinformaticspackage management

Repositories Contributed To

1 repo

Overview of all repositories you've contributed to across your timeline

bioconda/bioconda-recipes

Apr 2026 Apr 2026
1 Month active

Languages Used

YAML

Technical Skills

Pythonbioinformaticspackage management