bioconda/bioconda-recipes
Mar 2025 – Apr 2026
3 Months active
Languages Used
ShellYAMLCythonPython
Technical Skills
Build AutomationPackage ManagementBuild SystemConda PackagingPython 3 MigrationBuild systems
Francisco Pina-Martins
PROFILE
Francisco Pina-martins
Contributed to the bioconda/bioconda-recipes repository by developing and maintaining packaging workflows for bioinformatics tools, focusing on Python and Cython-based projects. Delivered a new AliView packaging recipe, establishing a reproducible build and testing process that aligns with Bioconda standards. Led the migration of FastStructure to Python 3, updating build scripts, Python code, and meta.yaml dependencies to ensure compatibility and reduce maintenance overhead. Addressed packaging reliability by resolving Cython 3 module duplication issues and adding setuptools as a host requirement. Demonstrated expertise in build automation, package management, and Python 3 migration, resulting in more robust and maintainable Bioconda packages.
Overall Statistics
Feature vs Bugs
67%Features
Repository Contributions
3Total
Bugs
1
Commits
3
Features
2
Lines of code
1,024
Activity Months3
Your Network
639 peopleWork History
April 2026
1 Commits
Apr 1, 2026Month: 2026-04 — Focused on Python 3 port compatibility and packaging reliability for faststructure in bioconda-recipes. Implemented a fix for duplicated module name handling with Cython 3 during the Python 3 port and added setuptools as a host requirement to stabilize builds and packaging for Python 3 users. Commit: ddaa684aec2d5ba87fed7c0f28407523d2fad965. This work reduces build failures, accelerates installation, and expands the user base by enabling Python 3 users to install and run faststructure reliably via Bioconda.
1 Commits
Apr 1, 2026Month: 2026-04 — Focused on Python 3 port compatibility and packaging reliability for faststructure in bioconda-recipes. Implemented a fix for duplicated module name handling with Cython 3 during the Python 3 port and added setuptools as a host requirement to stabilize builds and packaging for Python 3 users. Commit: ddaa684aec2d5ba87fed7c0f28407523d2fad965. This work reduces build failures, accelerates installation, and expands the user base by enabling Python 3 users to install and run faststructure reliably via Bioconda.
April 2026
July 2025
1 Commits • 1 Features
Jul 1, 2025July 2025 monthly summary for bioconda/bioconda-recipes: Implemented Python 3 compatibility for FastStructure to enable Python 3 builds and runtime. Updated build scripts, Python code, and meta.yaml dependencies to ensure smooth operation in Python 3 environments. This aligns with Bioconda's Python 2/3 transition and reduces user friction across research pipelines. The change is captured in commit a85abb509e0a1ca9fbddb4dba0e605b441d5b994 titled 'Updates fastStructure to use python3 (#57289)'.
July 2025
1 Commits • 1 Features
Jul 1, 2025July 2025 monthly summary for bioconda/bioconda-recipes: Implemented Python 3 compatibility for FastStructure to enable Python 3 builds and runtime. Updated build scripts, Python code, and meta.yaml dependencies to ensure smooth operation in Python 3 environments. This aligns with Bioconda's Python 2/3 transition and reduces user friction across research pipelines. The change is captured in commit a85abb509e0a1ca9fbddb4dba0e605b441d5b994 titled 'Updates fastStructure to use python3 (#57289)'.
March 2025
1 Commits • 1 Features
Mar 1, 2025March 2025 monthly summary focusing on packaging work for the Bioconda recipes repository. Delivered a new AliView packaging recipe to bioconda/bioconda-recipes, enabling streamlined installation and execution in Bioconda environments. No major bug fixes this month; primary value came from introducing a standards-compliant, maintainable packaging workflow and ready-to-review recipe.
1 Commits • 1 Features
Mar 1, 2025March 2025 monthly summary focusing on packaging work for the Bioconda recipes repository. Delivered a new AliView packaging recipe to bioconda/bioconda-recipes, enabling streamlined installation and execution in Bioconda environments. No major bug fixes this month; primary value came from introducing a standards-compliant, maintainable packaging workflow and ready-to-review recipe.
March 2025
Activity
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Quality Metrics
Correctness86.6%
Maintainability86.6%
Architecture86.6%
Performance80.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
CythonPythonShellYAML
Technical Skills
Build AutomationBuild SystemBuild systemsConda PackagingCythonPackage ManagementPackage managementPython 3 MigrationPython development
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