
Thomas Cleve contributed to the E3SM-Project/E3SM repository by developing and refining core atmospheric modeling infrastructure, focusing on modularity, performance, and maintainability. He engineered features such as selective tracer advection, unified field management across grids, and end-to-end tensor projection, while also modernizing build systems and CI pipelines. His work involved extensive use of C++, Fortran, and CMake, leveraging high-performance computing frameworks like Kokkos to optimize parallel execution. Through careful code refactoring, robust bug fixes, and thoughtful API design, Thomas improved simulation fidelity, data integrity, and codebase stability, demonstrating a deep understanding of scientific computing and software engineering best practices.

Month: 2025-09 | Repository: E3SM-Project/E3SM Key features delivered: - Flexible C++ standard configuration for EAMxx build: Extended CMakeLists.txt to allow an optional specification of the C++ standard; defaults to C++17 if no standard is set, enabling flexible and compatible build configurations. Major bugs fixed: - C++20 alignment and code style cleanup in SHOC and P3: - Removed default constructors from SHOC and P3 data structures to align with C++20 and prevent aggregate initialization issues. - Applied clang-format to shoc_functions.hpp and p3_functions.hpp for consistent code style. Overall impact and accomplishments: - Improved build configurability and standards compliance; enhanced code quality and maintainability; reduced risk of aggregate initialization issues and enabled easier downstream integration. Technologies/skills demonstrated: - CMake build customization and C++ standard negotiation (C++17/C++20) - Code style enforcement using clang-format - Code maintenance and collaboration with traceable commits (DCO-friendly, clear commit messages)
Month: 2025-09 | Repository: E3SM-Project/E3SM Key features delivered: - Flexible C++ standard configuration for EAMxx build: Extended CMakeLists.txt to allow an optional specification of the C++ standard; defaults to C++17 if no standard is set, enabling flexible and compatible build configurations. Major bugs fixed: - C++20 alignment and code style cleanup in SHOC and P3: - Removed default constructors from SHOC and P3 data structures to align with C++20 and prevent aggregate initialization issues. - Applied clang-format to shoc_functions.hpp and p3_functions.hpp for consistent code style. Overall impact and accomplishments: - Improved build configurability and standards compliance; enhanced code quality and maintainability; reduced risk of aggregate initialization issues and enabled easier downstream integration. Technologies/skills demonstrated: - CMake build customization and C++ standard negotiation (C++17/C++20) - Code style enforcement using clang-format - Code maintenance and collaboration with traceable commits (DCO-friendly, clear commit messages)
August 2025 monthly summary for E3SM (repo: E3SM-Project/E3SM). Focused on stabilizing builds and enhancing CI coverage to improve reliability and compatibility with evolving dependencies. Key actions include temporarily disabling a failing MPI test in the DP unit tests to prevent build-time failures while a long-term MPI fix is developed, and adding weekly EAMxx checks against the latest Kokkos develop branch to boost test robustness and early issue detection. This work reduces flaky builds, accelerates feedback, and demonstrates strong CI/DevOps and MPI/CMake proficiency.
August 2025 monthly summary for E3SM (repo: E3SM-Project/E3SM). Focused on stabilizing builds and enhancing CI coverage to improve reliability and compatibility with evolving dependencies. Key actions include temporarily disabling a failing MPI test in the DP unit tests to prevent build-time failures while a long-term MPI fix is developed, and adding weekly EAMxx checks against the latest Kokkos develop branch to boost test robustness and early issue detection. This work reduces flaky builds, accelerates feedback, and demonstrates strong CI/DevOps and MPI/CMake proficiency.
May 2025 monthly summary for E3SM: Delivered robustness and maintainability improvements to the SHOC physics module within the E3SM repository. Implemented targeted fixes to prevent floating point exceptions in length-scale calculations and improved readability of the TKE mixing length logic. These changes enhance long-run simulation stability and code health, supporting safer future SHOC enhancements.
May 2025 monthly summary for E3SM: Delivered robustness and maintainability improvements to the SHOC physics module within the E3SM repository. Implemented targeted fixes to prevent floating point exceptions in length-scale calculations and improved readability of the TKE mixing length logic. These changes enhance long-run simulation stability and code health, supporting safer future SHOC enhancements.
Month: 2025-04 — Delivered end-to-end tensor projection capability in the EAMxx/HOMME driver, stabilized numerical diagnostics, and modernized GPU-facing heuristics to improve portability and performance across CPU/GPU architectures. The work emphasized business value through more accurate simulations, robust CFL estimates, and improved scalability on accelerator platforms.
Month: 2025-04 — Delivered end-to-end tensor projection capability in the EAMxx/HOMME driver, stabilized numerical diagnostics, and modernized GPU-facing heuristics to improve portability and performance across CPU/GPU architectures. The work emphasized business value through more accurate simulations, robust CFL estimates, and improved scalability on accelerator platforms.
March 2025 was focused on strengthening performance, stability, and maintainability across the E3SM codebase with a blend of targeted refactors, feature enhancements, and critical bug fixes. The work delivered reduces runtime overhead, preserves API stability, improves tracer/layout correctness, expands advection/parameter handling capabilities, and reinforces overall code quality for future development.
March 2025 was focused on strengthening performance, stability, and maintainability across the E3SM codebase with a blend of targeted refactors, feature enhancements, and critical bug fixes. The work delivered reduces runtime overhead, preserves API stability, improves tracer/layout correctness, expands advection/parameter handling capabilities, and reinforces overall code quality for future development.
February 2025: Delivered stability, refactoring, and usability improvements for E3SM with a focus on FieldManager, FM integration, and grid handling. Achieved a more robust build, clearer grid/field cloning semantics, and streamlined configuration paths, while laying groundwork for future simplifications and performance improvements.
February 2025: Delivered stability, refactoring, and usability improvements for E3SM with a focus on FieldManager, FM integration, and grid handling. Achieved a more robust build, clearer grid/field cloning semantics, and streamlined configuration paths, while laying groundwork for future simplifications and performance improvements.
Summary for 2025-01: Delivered Unified Field Manager across grids in the E3SM project, unifying field handling, simplifying group logic, and removing derivation types. This refactor ensures consistent access to subfields across grid types and lays groundwork for cross-grid data workflows, improving data integrity and maintainability across simulations.
Summary for 2025-01: Delivered Unified Field Manager across grids in the E3SM project, unifying field handling, simplifying group logic, and removing derivation types. This refactor ensures consistent access to subfields across grid types and lays groundwork for cross-grid data workflows, improving data integrity and maintainability across simulations.
Month: 2024-12 — Consolidated performance review for E3SM project. Delivered key features with correctness and efficiency improvements, fixed log-related issues, and enhanced maintainability. Focused on robustness, optimized data handling, and cleaner output across critical components.
Month: 2024-12 — Consolidated performance review for E3SM project. Delivered key features with correctness and efficiency improvements, fixed log-related issues, and enhanced maintainability. Focused on robustness, optimized data handling, and cleaner output across critical components.
Concise monthly summary for 2024-11 focusing on key business value and technical accomplishments for E3SM. The main deliverable was the IOP forcing mechanism refactor and the introduction of IOPDataManager, enabling better modularity and more accurate assimilation of observational data.
Concise monthly summary for 2024-11 focusing on key business value and technical accomplishments for E3SM. The main deliverable was the IOP forcing mechanism refactor and the introduction of IOPDataManager, enabling better modularity and more accurate assimilation of observational data.
October 2024: Delivered selective tracer advection capability in SHOC within the E3SM project, enabling precise control of tracer transport and improved physical fidelity in turbulence-affected simulations. Implemented a turbulence_advected flag in add_tracer and configured SHOC to request a specific group of tracers ('turbulence_advected_tracers') rather than the general 'tracers' group. This aligns with the commit af7fdb2893bcba9f51b96c146b52d1bb50c85059 and supports targeted tracer experiments with reproducible results.
October 2024: Delivered selective tracer advection capability in SHOC within the E3SM project, enabling precise control of tracer transport and improved physical fidelity in turbulence-affected simulations. Implemented a turbulence_advected flag in add_tracer and configured SHOC to request a specific group of tracers ('turbulence_advected_tracers') rather than the general 'tracers' group. This aligns with the commit af7fdb2893bcba9f51b96c146b52d1bb50c85059 and supports targeted tracer experiments with reproducible results.
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