March 2026 nf-core/modules monthly summary: delivered a targeted bug fix to prevent basename collisions in FASTQC input processing by staging input files, improving data integrity and pipeline reliability. The change reduces cross-file interference and ensures correct processing of FASTQC inputs across workflows.

January 2026: nf-core/modules focused on stabilizing the CellRanger Multi workflow and strengthening test coverage for robustness across datasets. Key fixes and tests delivered to reduce production risk and improve data processing reliability.

December 2025 monthly summary for nf-core/modules focused on delivering consistent, standards-aligned outputs and reinforcing test coverage to protect downstream analyses. The primary feature delivered was adopting R1/R2 naming conventions for FASTP module outputs, aligning with common paired-end data practices and improving data provenance across pipelines. This change reduces confusion in downstream processing and simplifies data cataloging.

Concise monthly summary for Nov 2025 covering nf-core/tools and nf-core/modules work, focusing on business value, reliability, and technical accomplishments.

October 2025 monthly summary for nf-core/modules: delivered a critical bug fix in the downstream processing path for Cellranger mkfastq by splitting index and primary FASTQ files and emitting them via explicit output channels. Updated tests and metadata to reflect the new outputs, ensuring compatibility with downstream modules and improving reliability of downstream pipelines. This work reduces downstream failures and improves data integrity for sequencing runs.