zamprof123/rp1b_task1
Nov 2024 – Dec 2024
2 Months active
Languages Used
PythonShellText
Technical Skills
Basic ScriptingBioinformaticsData AnalysisDocumentationFile I/OGenomics
tm2463
PROFILE
Tm2463
During two months on the zamprof123/rp1b_task1 repository, Tom Murphy developed a suite of bioinformatics tools and educational resources using Python and shell scripting. He built scripts for GC content calculation, RNA splicing with protein translation, DNA sequence overlap detection, and restriction site scanning, each designed for repeatable analysis and pipeline integration. Tom also expanded documentation and educational content, clarifying data processing workflows and refining mutation analysis for genomic samples. His work emphasized data analysis, file I/O, and string manipulation, resulting in maintainable, well-documented code that supports both automated genomics pipelines and reproducible research in a teaching context.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
13Total
Bugs
0
Commits
13
Features
7
Lines of code
282
Activity Months2
Your Network
20 people
Work History
December 2024
2 Commits • 1 Features
Dec 1, 2024December 2024 monthly summary for zamprof123/rp1b_task1: Key focus on refining the Question_2 analysis and clarifying the data processing pipeline for Sample A. Highlights include identifying a region with high mutation density and altered read depth, considering potential misassembly in repetitive DNA regions by the assembler, and documenting that depth files are downloaded and processed by a Python script to clarify the data processing workflow for subsequent analyses. All work aligns with improving data interpretation, reproducibility, and readiness for downstream reporting.
2 Commits • 1 Features
Dec 1, 2024December 2024 monthly summary for zamprof123/rp1b_task1: Key focus on refining the Question_2 analysis and clarifying the data processing pipeline for Sample A. Highlights include identifying a region with high mutation density and altered read depth, considering potential misassembly in repetitive DNA regions by the assembler, and documenting that depth files are downloaded and processed by a Python script to clarify the data processing workflow for subsequent analyses. All work aligns with improving data interpretation, reproducibility, and readiness for downstream reporting.
December 2024
November 2024
11 Commits • 6 Features
Nov 1, 2024Concise monthly summary for 2024-11 highlighting delivery across genomics tooling and educational content in zamprof123/rp1b_task1. Focus on business value, repeatable scripts, and pipeline readiness.
November 2024
11 Commits • 6 Features
Nov 1, 2024Concise monthly summary for 2024-11 highlighting delivery across genomics tooling and educational content in zamprof123/rp1b_task1. Focus on business value, repeatable scripts, and pipeline readiness.
Activity
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Quality Metrics
Correctness84.6%
Maintainability84.6%
Architecture77.0%
Performance80.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
PythonShellText
Technical Skills
Basic ScriptingBioinformaticsData AnalysisDocumentationFile I/OGenomicsScriptingString Manipulation
Repositories Contributed To
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