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Thomas Visser

PROFILE

Thomas Visser

Over a three-month period, contributed to hartwigmedical/actin and hartwigmedical/scripts by delivering features focused on backend reliability, data processing, and operational analytics. Enhanced molecular pathology report UI and data typing using Kotlin, introducing a CopyNumberType adapter for robust JSON mapping and improving test stability. Developed a CUPPA-to-DOID mapping system with TSV-based configuration and warning-based rule logic, increasing resilience in tumor location evaluation. Additionally, created a Python script in hartwigmedical/scripts to summarize Google Cloud Compute Engine Spot VM lifecycle logs, supporting incident analysis and capacity planning. Demonstrated skills in Kotlin, Python, cloud computing, and algorithm design across these projects.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

3Total
Bugs
0
Commits
3
Features
3
Lines of code
1,213
Activity Months3

Work History

May 2026

1 Commits • 1 Features

May 1, 2026

May 2026 Monthly Summary: Delivered a focused analytics script to summarize Compute Engine Spot/preemptible VM lifecycle logs in hartwigmedical/scripts, improving visibility into VM preemption events and lifecycle transitions. This supports faster incident analysis, capacity planning, and cost optimization through lifecycle analytics. The change is tracked as INFRA-2702: Add admin/gcp_preempt_stats and includes commit 9aafb29dcb095166d4349d321c15e49267aced98.

March 2026

1 Commits • 1 Features

Mar 1, 2026

March 2026 monthly summary for hartwigmedical/actin focusing on features and bugs delivered, code quality, and business impact. 1) Key features delivered: - CUPPA-to-DOID mapping for tumor location evaluation, with a TSV-based mapping read into the system for configurability via the cuppa_doid_mapping_tsv CLI argument. - Rule behavior adjusted to issue a warning for conclusive CUPPA predictions (>80% likelihood) that match the queried DOID, instead of failing, improving robustness for cancer types with unknown primary origins. - Architectural improvement: Moved TumorOriginInterpreter from the report module into a shared common area and integrated it into PrimaryTumorLocationBelongsToDoid for broader reuse. 2) Major bugs fixed: - Implemented warning-based handling for conclusive CUPPA predictions to prevent unnecessary failures when primary origin data is incomplete or ambiguous, aligned with PR feedback and test updates. - Updated tests to cover the new behavior and mapping configuration. 3) Overall impact and accomplishments: - Increased reliability and resilience of tumor location evaluation in the face of incomplete or ambiguous CUPPA predictions, reducing false negatives/failures and enabling smoother downstream decision support. - Improved maintainability through code reuse (common TumorOriginInterpreter) and configurable mapping, enabling quicker future adjustments. 4) Technologies/skills demonstrated: - TSV-based mapping configuration, CLI-driven feature toggles, and rule-based decision logic. - Cross-module refactoring and reuse of a shared interpreter across components. - PR feedback processing, test-driven validation, and documentation of new behavior for stakeholders.

February 2026

1 Commits • 1 Features

Feb 1, 2026

February 2026 monthly summary for hartwigmedical/actin focused on molecular pathology reports enhancements in the UI and data typing, plus test maintenance and stability improvements. Delivered a reorganized UI for molecular sections, introduced a CopyNumberType adapter for robust JSON mapping, and strengthened visual hierarchy. Addressed regression/test issues, updated references, and incorporated PR feedback to improve reliability and developer velocity.

Activity

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Quality Metrics

Correctness86.6%
Maintainability80.0%
Architecture80.0%
Performance80.0%
AI Usage40.0%

Skills & Technologies

Programming Languages

KotlinPython

Technical Skills

Google Cloud PlatformKotlinalgorithm designbackend developmentcloud computingdata analysisdata processingscriptingunit testing

Repositories Contributed To

2 repos

Overview of all repositories you've contributed to across your timeline

hartwigmedical/actin

Feb 2026 Mar 2026
2 Months active

Languages Used

Kotlin

Technical Skills

Kotlinbackend developmentunit testingalgorithm designdata processing

hartwigmedical/scripts

May 2026 May 2026
1 Month active

Languages Used

Python

Technical Skills

Google Cloud Platformcloud computingdata analysisscripting