EBI-Metagenomics/nf-modules
Oct 2025 – Oct 2025
1 Month active
Languages Used
NextflowShellYAML
Technical Skills
BioinformaticsConfigurationDevOpsGitWorkflow Management
vagkaratzas
PROFILE
Vagkaratzas
Worked on the EBI-Metagenomics/nf-modules repository, delivering two features focused on improving workflow consistency and repository maintainability. Migrated the Pyrodigal gene caller from a local implementation to the nf-core module, updating the combined gene caller subworkflow to enhance reproducibility and align with nf-core standards. Emphasized build and test hygiene by removing unnecessary symlinks and updating the .gitignore file to prevent tracking of transient test artifacts, reducing repository clutter. Utilized Nextflow, Shell, and YAML to implement these changes, applying skills in bioinformatics, configuration, and DevOps to streamline workflows and support more stable, maintainable bioinformatics pipeline development.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
3Total
Bugs
0
Commits
3
Features
2
Lines of code
472
Activity Months1
Work History
October 2025
3 Commits • 2 Features
Oct 1, 2025October 2025 monthly summary for EBI-Metagenomics/nf-modules: Key features delivered include Pyrodigal nf-core integration and build/test hygiene improvements. No major bugs fixed this month; focus was on stability, consistency, and maintainability. Impact: improved gene caller consistency and reproducibility, reduced repo clutter and noise for tests. Technologies demonstrated: nf-core standards, Pyrodigal usage migration, Python workflows, and Git hygiene.
3 Commits • 2 Features
Oct 1, 2025October 2025 monthly summary for EBI-Metagenomics/nf-modules: Key features delivered include Pyrodigal nf-core integration and build/test hygiene improvements. No major bugs fixed this month; focus was on stability, consistency, and maintainability. Impact: improved gene caller consistency and reproducibility, reduced repo clutter and noise for tests. Technologies demonstrated: nf-core standards, Pyrodigal usage migration, Python workflows, and Git hygiene.
October 2025
Activity
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Quality Metrics
Correctness93.4%
Maintainability93.4%
Architecture93.4%
Performance86.6%
AI Usage20.0%
Skills & Technologies
Programming Languages
NextflowShellYAML
Technical Skills
BioinformaticsConfigurationDevOpsGitWorkflow Management
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