bioconda/bioconda-recipes
Sep 2025 – Feb 2026
2 Months active
Languages Used
ShellYAMLbashyaml
Technical Skills
Bioinformatics Tool IntegrationBuild System ConfigurationPackage Managementbioinformaticsbuild scriptingpackage management
zzhofict
PROFILE
Zzhofict
Contributed to the bioconda/bioconda-recipes repository by delivering two bioinformatics tools focused on reproducible packaging and deployment. Developed build scripts and metadata in Shell and YAML to integrate the Fastdup tool for marking duplicates in coordinate-sorted SAM/BAM files, establishing a robust build environment and package specifications. Later, packaged the bwa-fastalign sequence alignment tool, updating meta.yaml and incorporating a DOI to enhance reproducibility and citation. Addressed packaging and build issues, such as max_pin adjustments, to ensure reliable deployments. Collaborated with peers on code quality and review, demonstrating strengths in bioinformatics tool integration, build system configuration, and package management workflows.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
2
Lines of code
132
Activity Months2
Your Network
639 peopleWork History
February 2026
1 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for bioconda/bioconda-recipes. Delivered a new sequence alignment tool packaging workflow with bwa-fastalign v1.0.0, including build scripts and packaging metadata to enable seamless distribution via Bioconda. Updated recipe metadata (meta.yaml) and added a DOI to improve citation, reproducibility, and traceability. Addressed packaging/build issues for bwa-fastalign (including max_pin adjustments) to ensure robust, repeatable builds. Collaborated with Thanh Lee on co-authored commits to improve code quality and review.
1 Commits • 1 Features
Feb 1, 2026February 2026 monthly summary for bioconda/bioconda-recipes. Delivered a new sequence alignment tool packaging workflow with bwa-fastalign v1.0.0, including build scripts and packaging metadata to enable seamless distribution via Bioconda. Updated recipe metadata (meta.yaml) and added a DOI to improve citation, reproducibility, and traceability. Addressed packaging/build issues for bwa-fastalign (including max_pin adjustments) to ensure robust, repeatable builds. Collaborated with Thanh Lee on co-authored commits to improve code quality and review.
February 2026
September 2025
1 Commits • 1 Features
Sep 1, 20252025-09 monthly summary focusing on the bioconda/bioconda-recipes feature delivery and packaging readiness for the Fastdup tool. Key achievements include delivering the Fastdup tool for marking duplicates in coordinate-sorted SAM/BAM files, along with build scripts and metadata configuration to enable packaging and integration. This work establishes the build environment and package specifications for the tool, improving reproducibility and deployment across the Bioconda ecosystem. No major bugs were documented this month; packaging and build script refinements were the primary focus to support the new tool.
September 2025
1 Commits • 1 Features
Sep 1, 20252025-09 monthly summary focusing on the bioconda/bioconda-recipes feature delivery and packaging readiness for the Fastdup tool. Key achievements include delivering the Fastdup tool for marking duplicates in coordinate-sorted SAM/BAM files, along with build scripts and metadata configuration to enable packaging and integration. This work establishes the build environment and package specifications for the tool, improving reproducibility and deployment across the Bioconda ecosystem. No major bugs were documented this month; packaging and build script refinements were the primary focus to support the new tool.
Activity
Loading activity data...
Quality Metrics
Correctness90.0%
Maintainability90.0%
Architecture90.0%
Performance90.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
ShellYAMLbashyaml
Technical Skills
Bioinformatics Tool IntegrationBuild System ConfigurationPackage Managementbioinformaticsbuild scriptingpackage management
Repositories Contributed To
Overview of all repositories you've contributed to across your timeline