PlasmoGenEpi/PGEcore
Feb 2026 – Mar 2026
2 Months active
Languages Used
JSONMarkdownR
Technical Skills
R programmingbioinformaticsdata analysisdata processingdata validationdocumentation
Alfred Hubbard
PROFILE
Alfred Hubbard
Contributed to the PlasmoGenEpi/PGEcore repository by delivering three new features focused on improving usability and integration for genetic epidemiology workflows. Developed enhancements to the Dcifer wrapper, including a new single-locus allele frequency module and flexible data handling, while refining multi-locus allele frequency estimation through new R scripts and input validation. Updated naive frequency output estimators to streamline downstream analysis and onboarding. All work emphasized reproducibility, clear documentation, and robust data processing using R, JSON, and Markdown. During the following month, maintained repository stability and alignment with project standards, ensuring readiness for future development cycles without introducing new changes.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
10Total
Bugs
0
Commits
10
Features
3
Lines of code
285,753
Activity Months2
Your Network
14 peopleSame Organization
@jh.edu11
Andrew ZalesakMember
Chaichontat SriworaratMember
Xiaobei ZengMember
Lucia CilloniMember
TinkAnetMember
Melissa SchnureMember
NicholasMember
Ryan ForsterMember
Todd FojoMember
Shared Repositories
3
Work History
March 2026
Development Work
Mar 1, 2026Month: 2026-03 — PGEcore (PlasmoGenEpi/PGEcore) delivered no new features or bug fixes in March 2026 based on the provided data. The month was focused on stabilization and readiness for upcoming work cycles, with no changes committed to PGEcore during this period.
Development Work
Mar 1, 2026Month: 2026-03 — PGEcore (PlasmoGenEpi/PGEcore) delivered no new features or bug fixes in March 2026 based on the provided data. The month was focused on stabilization and readiness for upcoming work cycles, with no changes committed to PGEcore during this period.
March 2026
February 2026
10 Commits • 3 Features
Feb 1, 2026February 2026 (2026-02) monthly wrap-up for PlasmoGenEpi/PGEcore. Key features delivered include extensive usability and integration improvements to the Dcifer wrapper, a new Dcifer SLAF wrapper, and enhancements to multi-locus allele frequency estimation workflows. Also completed updates to naive frequency output estimators for better usability and downstream integration. These changes collectively strengthen end-to-end analysis, reproducibility, and data handling across loci and samples, enabling more accurate COI estimation and faster onboarding for new users.
February 2026
10 Commits • 3 Features
Feb 1, 2026February 2026 (2026-02) monthly wrap-up for PlasmoGenEpi/PGEcore. Key features delivered include extensive usability and integration improvements to the Dcifer wrapper, a new Dcifer SLAF wrapper, and enhancements to multi-locus allele frequency estimation workflows. Also completed updates to naive frequency output estimators for better usability and downstream integration. These changes collectively strengthen end-to-end analysis, reproducibility, and data handling across loci and samples, enabling more accurate COI estimation and faster onboarding for new users.
Activity
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Quality Metrics
Correctness94.0%
Maintainability86.0%
Architecture88.0%
Performance86.0%
AI Usage24.0%
Skills & Technologies
Programming Languages
JSONMarkdownR
Technical Skills
R programmingbioinformaticsdata analysisdata processingdata validationdocumentationscript managementscriptingsoftware developmentstatistical modeling
Repositories Contributed To
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