PlasmoGenEpi/PGEcore
Dec 2024 – Jan 2025
2 Months active
Languages Used
BEDMarkdownTSV
Technical Skills
Bioinformatics DataData ManagementDocumentationProject ManagementData Standardization
kathryn1995
PROFILE
Kathryn1995
Kathryn Murie contributed to the PlasmoGenEpi/PGEcore repository by establishing foundational documentation and standardizing core data management practices over a two-month period. She created a comprehensive documentation structure using Markdown, including onboarding materials and templates to streamline future contributions and testing. Kathryn also delivered example data sets in BED and TSV formats to support validation and demonstration workflows. In January, she implemented targeted data standardization by unifying specimen identifiers across key TSV tables, improving data consistency and analytics readiness. Her work emphasized maintainability and collaboration, laying a robust groundwork for scalable schema evolution and reliable downstream bioinformatics data processing.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
5Total
Bugs
0
Commits
5
Features
3
Lines of code
363
Activity Months2
Your Network
7 peopleSame Organization
@ucsf.edu4
Shared Repositories
3
Work History
January 2025
1 Commits • 1 Features
Jan 1, 2025January 2025 (2025-01): Implemented targeted data standardization in PlasmoGenEpi/PGEcore to align specimen_id usage across core data tables, improving data quality, downstream processing, and analytics readiness. The change reduces ambiguity between headers and supports scalable schema evolution.
1 Commits • 1 Features
Jan 1, 2025January 2025 (2025-01): Implemented targeted data standardization in PlasmoGenEpi/PGEcore to align specimen_id usage across core data tables, improving data quality, downstream processing, and analytics readiness. The change reduces ambiguity between headers and supports scalable schema evolution.
January 2025
December 2024
4 Commits • 2 Features
Dec 1, 2024December 2024 monthly work summary for PlasmoGenEpi/PGEcore focusing on foundational documentation, contributor readiness, and test data to enable reliable testing, demos, and collaboration.
December 2024
4 Commits • 2 Features
Dec 1, 2024December 2024 monthly work summary for PlasmoGenEpi/PGEcore focusing on foundational documentation, contributor readiness, and test data to enable reliable testing, demos, and collaboration.
Activity
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Quality Metrics
Correctness96.0%
Maintainability96.0%
Architecture96.0%
Performance100.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
BEDMarkdownTSV
Technical Skills
Bioinformatics DataData ManagementData StandardizationDocumentationProject Management
Repositories Contributed To
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