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Adrian Altenhoff

PROFILE

Adrian Altenhoff

During the month, contributed two major features focused on stability and scalability in the bioconda/bioconda-recipes and galaxyproject/tools-iuc repositories. Delivered a build system and dependency upgrade for the omark package, introducing uv-build as a host dependency to improve compatibility and reliability in Python-based workflows. Developed FastOMA, a scalable orthology inference tool supporting multi-genome analysis and detailed reporting, with comprehensive input and output specifications. Enhanced test automation, linting, and shed configuration to ensure robust tool packaging within the Galaxy framework. Demonstrated expertise in Python, XML, and dependency management, resulting in more reliable builds and expanded capabilities for large-scale bioinformatics analyses.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

2Total
Bugs
0
Commits
2
Features
2
Lines of code
474
Activity Months1

Your Network

753 people

Same Organization

@inf.ethz.ch
21
Andreas OpedalMember
Chenhao SunMember
Dimitar DimitrovMember
Isaac van BakelMember
Jan KleineMember
Jasper DekoninckMember
Jonas BachmannMember
Gianni-MBMember
Lixin XueMember

Work History

December 2025

2 Commits • 2 Features

Dec 1, 2025

2025-12 Monthly Summary: Two high-impact deliverables across Bioconda and Galaxy Tools IUC, focused on stability, scalability, and researcher value. Key features delivered include a Build System and Dependency Upgrade for omark (0.4.1) with uv-build as a host dependency to improve compatibility and build reliability, and the introduction of FastOMA, a scalable orthology inference tool with multi-genome support and comprehensive reporting. Major bugs fixed include resolving omark build issues flagged in #61106 via the upgrade and dependency changes. Overall impact: more reliable builds, expanded capabilities for large-scale genomics analyses, and a stronger, thoroughly tested toolchain. Technologies demonstrated: package management and host-dependency resolution, Galaxy tool packaging and shed configuration, test automation, linting improvements, and memory tuning for Nextflow.

Activity

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Quality Metrics

Correctness90.0%
Maintainability90.0%
Architecture90.0%
Performance90.0%
AI Usage30.0%

Skills & Technologies

Programming Languages

PythonXML

Technical Skills

Galaxy frameworkPython developmentbioinformaticsdata analysisdependency managementpackage managementtool development

Repositories Contributed To

2 repos

Overview of all repositories you've contributed to across your timeline

bioconda/bioconda-recipes

Dec 2025 Dec 2025
1 Month active

Languages Used

Python

Technical Skills

Python developmentdependency managementpackage management

galaxyproject/tools-iuc

Dec 2025 Dec 2025
1 Month active

Languages Used

PythonXML

Technical Skills

Galaxy frameworkbioinformaticsdata analysistool development