cadet/CADET-Core
Apr 2025 – Feb 2026
7 Months active
Languages Used
C++JSONPythonRSTreStructuredText
Technical Skills
Chemical EngineeringDocumentationReaction Kinetics ModelingSoftware DevelopmentTestingC++
Antonia Berger
PROFILE
Antonia Berger
A. Berger developed advanced biochemical modeling features for the cadet/CADET-Core repository, focusing on reaction kinetics and multi-phase simulation. Over seven months, Berger implemented enhancements such as non-competitive, competitive, and uncompetitive inhibition in Michaelis-Menten models, unified reaction systems across phases, and multi-reaction support for CSTR and related models. Using C++ and Python, Berger refactored core modules, improved memory management, and expanded test coverage to ensure numerical accuracy and model reliability. The work included fixing critical bugs in Jacobian calculations and parameter sensitivities, updating documentation, and integrating benchmark tests, resulting in more robust, flexible, and accurate scientific computing workflows.
Overall Statistics
Feature vs Bugs
78%Features
Repository Contributions
13Total
Bugs
2
Commits
13
Features
7
Lines of code
29,513
Activity Months7
Your Network
61 peopleShared Repositories
12
Work History
February 2026
1 Commits
Feb 1, 2026February 2026: Cadet/CADET-Core delivered a critical bug fix in the General Rate Model (GRM) that corrected the residualBulk execution flow and Jacobian calculation. The premature return in residualBulk was causing incorrect Jacobian computations, affecting dynamic reactions modeling. The fix, together with updated unit tests to reflect precision changes for dynamic reactions, improved model accuracy and numerical stability. This work enhances the reliability of GRM simulations, enabling more accurate scenario analyses and downstream decisions. Commit: 1b657090c2fd34b675ca0e2f6a65d7b356e79d4c.
1 Commits
Feb 1, 2026February 2026: Cadet/CADET-Core delivered a critical bug fix in the General Rate Model (GRM) that corrected the residualBulk execution flow and Jacobian calculation. The premature return in residualBulk was causing incorrect Jacobian computations, affecting dynamic reactions modeling. The fix, together with updated unit tests to reflect precision changes for dynamic reactions, improved model accuracy and numerical stability. This work enhances the reliability of GRM simulations, enabling more accurate scenario analyses and downstream decisions. Commit: 1b657090c2fd34b675ca0e2f6a65d7b356e79d4c.
February 2026
January 2026
3 Commits • 1 Features
Jan 1, 2026Monthly summary for 2026-01 focusing on delivering a unified reaction system across all unit operations and phases, along with targeted bug fixes to improve model correctness. The work enhances consistency, test coverage, and documentation, establishing a more robust foundation for CADET Core.
January 2026
3 Commits • 1 Features
Jan 1, 2026Monthly summary for 2026-01 focusing on delivering a unified reaction system across all unit operations and phases, along with targeted bug fixes to improve model correctness. The work enhances consistency, test coverage, and documentation, establishing a more robust foundation for CADET Core.
December 2025
3 Commits • 2 Features
Dec 1, 2025December 2025 summary for cadet/CADET-Core: Delivered two high-impact features enhancing multi-phase reaction modeling and parameter sensitivity analysis, along with test updates to support the new systems. This work improves model fidelity, enables reliable parameter estimation, and extends CSTR dynamics support, delivering clear business value for simulations and decision-making.
3 Commits • 2 Features
Dec 1, 2025December 2025 summary for cadet/CADET-Core: Delivered two high-impact features enhancing multi-phase reaction modeling and parameter sensitivity analysis, along with test updates to support the new systems. This work improves model fidelity, enables reliable parameter estimation, and extends CSTR dynamics support, delivering clear business value for simulations and decision-making.
December 2025
November 2025
1 Commits • 1 Features
Nov 1, 2025Monthly development summary for 2025-11 focusing on cadet/CADET-Core. Primary feature delivery: Langmuir Exchange Model in Multi-Channel Transport (MCT) with end-to-end integration, benchmarks, and documentation. No major bugs reported this month; all work targeted feature expansion and reliability of MCT simulations. Demonstrated strong collaboration and cross-functional execution, delivering a reusable exchange module with clear testing and docs.
November 2025
1 Commits • 1 Features
Nov 1, 2025Monthly development summary for 2025-11 focusing on cadet/CADET-Core. Primary feature delivery: Langmuir Exchange Model in Multi-Channel Transport (MCT) with end-to-end integration, benchmarks, and documentation. No major bugs reported this month; all work targeted feature expansion and reliability of MCT simulations. Demonstrated strong collaboration and cross-functional execution, delivering a reusable exchange module with clear testing and docs.
September 2025
2 Commits • 1 Features
Sep 1, 2025September 2025 monthly summary for cadet/CADET-Core focusing on key feature delivery, bug fixes, and overall impact.
2 Commits • 1 Features
Sep 1, 2025September 2025 monthly summary for cadet/CADET-Core focusing on key feature delivery, bug fixes, and overall impact.
September 2025
July 2025
2 Commits • 1 Features
Jul 1, 2025Concise monthly summary for 2025-07 focusing on key accomplishments, business impact, and technical execution across the Cadet Core repository.
July 2025
2 Commits • 1 Features
Jul 1, 2025Concise monthly summary for 2025-07 focusing on key accomplishments, business impact, and technical execution across the Cadet Core repository.
April 2025
1 Commits • 1 Features
Apr 1, 2025April 2025: Updated Michaelis-Menten model to account for non-competitive inhibition in cadet/CADET-Core. This involved adjusting the rate, residual, and Jacobian equations and adding a reference test case to validate against micro-kinetics simulations. Commit 686a370e8a40952b045b20967b8de6399a718c32 (Update Michaelis Menten reaction for noncompetitive inhibition modeling, #382). Business value: increases accuracy of enzyme kinetics simulations under inhibitory conditions, enabling more reliable metabolic modeling and informed R&D decisions. Technical impact: numerical modeling refinement, regression testing, and improved traceability across the change.”,
1 Commits • 1 Features
Apr 1, 2025April 2025: Updated Michaelis-Menten model to account for non-competitive inhibition in cadet/CADET-Core. This involved adjusting the rate, residual, and Jacobian equations and adding a reference test case to validate against micro-kinetics simulations. Commit 686a370e8a40952b045b20967b8de6399a718c32 (Update Michaelis Menten reaction for noncompetitive inhibition modeling, #382). Business value: increases accuracy of enzyme kinetics simulations under inhibitory conditions, enabling more reliable metabolic modeling and informed R&D decisions. Technical impact: numerical modeling refinement, regression testing, and improved traceability across the change.”,
April 2025
Activity
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Quality Metrics
Correctness89.2%
Maintainability83.0%
Architecture86.2%
Performance80.0%
AI Usage27.6%
Skills & Technologies
Programming Languages
C++JSONPythonRSTreStructuredText
Technical Skills
Biochemical ModelingC++C++ developmentChemical EngineeringDocumentationModel DevelopmentPythonReaction Kinetics ModelingRefactoringScientific ComputingSoftware ArchitectureSoftware DevelopmentSoftware EngineeringSoftware architectureTesting
Repositories Contributed To
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