theiagen/public_health_bioinformatics
Jan 2026 – May 2026
2 Months active
Languages Used
MarkdownYAML
Technical Skills
bioinformaticsdocumentationstandard operating proceduresworkflow management
Bruna Iglesias
PROFILE
Bruna Iglesias
Contributed to the theiagen/public_health_bioinformatics repository by developing and refining standard operating procedures for bioinformatics workflows, with a focus on documentation quality and workflow management. Over two months, delivered updates to SOPs for Illumina PE and NCBI sequence data submission, including versioned uploads, formatting corrections, and integration with Terra-based workflows. Emphasized accuracy and traceability through clear commit histories and Git-based version control, while maintaining repository hygiene by standardizing entries and removing test artifacts. Utilized Markdown and YAML to enhance documentation clarity, supporting reproducibility and efficient onboarding. No major bugs were addressed, reflecting a focus on process and documentation improvements.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
2
Lines of code
60,832
Activity Months2
Your Network
19 peopleSame Organization
@theiagen.com5
Shared Repositories
14
Work History
May 2026
1 Commits • 1 Features
May 1, 2026May 2026 monthly summary for theiagen/public_health_bioinformatics: Delivered updates to standard operating procedures for submitting sequence data to NCBI and for the kSNP4 workflow in Terra. Implemented a new SOP, corrected formatting across the SOP catalog, and cleaned the all_sops.tsv by removing a test entry. Documentation improvements increased clarity and standardization for data submissions, enabling reliable replication and faster onboarding. These changes strengthen governance, support Terra-based workflows, and prepare the project for upcoming QA/production rollout. Technologies demonstrated include documentation standards, Git-based version control, and Terra workflow integration.
1 Commits • 1 Features
May 1, 2026May 2026 monthly summary for theiagen/public_health_bioinformatics: Delivered updates to standard operating procedures for submitting sequence data to NCBI and for the kSNP4 workflow in Terra. Implemented a new SOP, corrected formatting across the SOP catalog, and cleaned the all_sops.tsv by removing a test entry. Documentation improvements increased clarity and standardization for data submissions, enabling reliable replication and faster onboarding. These changes strengthen governance, support Terra-based workflows, and prepare the project for upcoming QA/production rollout. Technologies demonstrated include documentation standards, Git-based version control, and Terra workflow integration.
May 2026
January 2026
1 Commits • 1 Features
Jan 1, 2026January 2026 performance highlights for theiagen/public_health_bioinformatics: focused on documentation quality and release hygiene for TheiaProk Illumina PE SOPs. Key activities included updating SOP entries for IlliaProk Illumina PE, uploading TheiaProk Illumina PE v4 files, and upgrading v3 to prior version with corrected link formatting. These changes enhance accuracy, version control, and onboarding efficiency, with clear commit history (f2127d9b7311d6e9d9f649b36e5897ca034b75de). No major bug fixes were required this month; minor documentation formatting corrections were completed as part of the update.
January 2026
1 Commits • 1 Features
Jan 1, 2026January 2026 performance highlights for theiagen/public_health_bioinformatics: focused on documentation quality and release hygiene for TheiaProk Illumina PE SOPs. Key activities included updating SOP entries for IlliaProk Illumina PE, uploading TheiaProk Illumina PE v4 files, and upgrading v3 to prior version with corrected link formatting. These changes enhance accuracy, version control, and onboarding efficiency, with clear commit history (f2127d9b7311d6e9d9f649b36e5897ca034b75de). No major bug fixes were required this month; minor documentation formatting corrections were completed as part of the update.
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance100.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
MarkdownYAML
Technical Skills
bioinformaticsdocumentationstandard operating proceduresworkflow management
Repositories Contributed To
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