LiLabAtVT/I2GDS2024
Oct 2024 – Nov 2024
2 Months active
Languages Used
BashMarkdownShell
Technical Skills
BioinformaticsCommand Line Interface (CLI)DocumentationGenomic Data ScienceCommand Line InterfaceGenomics
camilleblock
PROFILE
Camilleblock
Camille Block enhanced the LiLabAtVT/I2GDS2024 repository by developing and documenting a reproducible DDRADseq analysis pipeline tailored for genomics coursework. She focused on expanding and refining the pipeline’s documentation, providing step-by-step guidance from Stacks installation through RAD tag processing, reference genome preparation, and Bowtie2-based alignment, all orchestrated via Bash and Shell scripting. Camille also established a dedicated workspace and scaffolding to streamline onboarding and course adoption, removing outdated files and aligning documentation with the evolving repository structure. Her work emphasized clarity and reproducibility, enabling new users to efficiently set up and execute genomic workflows in a command-line environment.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
18Total
Bugs
0
Commits
18
Features
2
Lines of code
394
Activity Months2
Your Network
52 peopleSame Organization
@vt.edu44
Work History
November 2024
16 Commits • 1 Features
Nov 1, 2024November 2024: DDRADseq Documentation and Scaffolding delivered for LiLabAtVT/I2GDS2024. Focused on creating a Camille workspace, scaffolding for ddRADseq analyses, and comprehensive user guidance to enable ddRADseq analyses in course settings. Performed repository hygiene to remove placeholders and unused directories. Overall progress emphasizes documentation-led implementation to accelerate adoption, reproducibility, and course readiness.
16 Commits • 1 Features
Nov 1, 2024November 2024: DDRADseq Documentation and Scaffolding delivered for LiLabAtVT/I2GDS2024. Focused on creating a Camille workspace, scaffolding for ddRADseq analyses, and comprehensive user guidance to enable ddRADseq analyses in course settings. Performed repository hygiene to remove placeholders and unused directories. Overall progress emphasizes documentation-led implementation to accelerate adoption, reproducibility, and course readiness.
November 2024
October 2024
2 Commits • 1 Features
Oct 1, 2024Month: 2024-10 — Focused on improving DDRADseq pipeline clarity and reproducibility through documentation enhancements in LiLabAtVT/I2GDS2024. Delivered a comprehensive DDRADseq Pipeline Documentation Update that guides users from introduction and installation of Stacks to end-to-end RAD tag processing, including downloading reference genomes, Bowtie2 indexing and alignment, SAM-to-BAM conversion, and running gstacks and populations. Also removed outdated to-dos and corrected file paths and example commands to reflect current workflow.
October 2024
2 Commits • 1 Features
Oct 1, 2024Month: 2024-10 — Focused on improving DDRADseq pipeline clarity and reproducibility through documentation enhancements in LiLabAtVT/I2GDS2024. Delivered a comprehensive DDRADseq Pipeline Documentation Update that guides users from introduction and installation of Stacks to end-to-end RAD tag processing, including downloading reference genomes, Bowtie2 indexing and alignment, SAM-to-BAM conversion, and running gstacks and populations. Also removed outdated to-dos and corrected file paths and example commands to reflect current workflow.
Activity
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Quality Metrics
Correctness94.4%
Maintainability94.4%
Architecture92.2%
Performance91.2%
AI Usage24.4%
Skills & Technologies
Programming Languages
BashMarkdownShell
Technical Skills
BioinformaticsCommand Line InterfaceCommand Line Interface (CLI)DocumentationGenomic Data ScienceGenomicsShell Scripting
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