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Michael L Heuer

PROFILE

Michael L Heuer

Michael Heuer developed and enhanced bioinformatics tooling across bioconda/bioconda-recipes and nf-core/sarek, focusing on packaging, workflow reproducibility, and annotation flexibility. He released dsh-bio v3.0, expanding its build scripts and metadata to support new command-line tools and DOI tracking, using Shell and YAML for configuration. Heuer also created a complete Bioconda recipe for the eider tool, streamlining installation and distribution for researchers. In nf-core/sarek, he implemented custom columns support for bcftools annotate, updating Nextflow pipeline modules and documentation to enable targeted variant annotation. His work demonstrated depth in package management, DevOps, and VCF annotation workflows.

Overall Statistics

Feature vs Bugs

100%Features

Repository Contributions

3Total
Bugs
0
Commits
3
Features
3
Lines of code
169
Activity Months3

Work History

October 2025

1 Commits • 1 Features

Oct 1, 2025

October 2025: nf-core/sarek delivered a targeted feature to enhance variant annotation flexibility. Implemented Custom columns support for bcftools annotate, allowing selective use of specific columns from the annotation file. The work included updates to the annotate module, pipeline configuration, and accompanying documentation to support the new parameter, improving reproducibility and downstream analysis workflows.

April 2025

1 Commits • 1 Features

Apr 1, 2025

April 2025 monthly summary for bioconda/bioconda-recipes focused on packaging improvements and expanding tool distribution. Delivered a new Bioconda recipe for the 'eider' tool, enabling streamlined installation and distribution through the Bioconda channel. The work includes end-to-end recipe scaffolding (build scripts, metadata, dependencies, source URL) and tested commands to validate installations in user environments.

March 2025

1 Commits • 1 Features

Mar 1, 2025

March 2025: Key feature delivery and technical milestones for bioconda/bioconda-recipes. Primary accomplishment: dsh-bio v3.0 release with new functionalities and identifiers, including an expanded build script with new CLI tools for data manipulation and extraction, and updated meta.yaml to reflect the new version and include a DOI identifier. There were no major bugs fixed this month; the release-focused work establishes a stable foundation for downstream workflows and reproducibility.

Activity

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Quality Metrics

Correctness93.4%
Maintainability93.4%
Architecture93.4%
Performance86.6%
AI Usage20.0%

Skills & Technologies

Programming Languages

ShellYAMLnf

Technical Skills

BioinformaticsBioinformatics Tool PackagingBioinformatics ToolingDevOpsNextflowPackage ManagementVCF Annotation

Repositories Contributed To

2 repos

Overview of all repositories you've contributed to across your timeline

bioconda/bioconda-recipes

Mar 2025 Apr 2025
2 Months active

Languages Used

ShellYAML

Technical Skills

Bioinformatics ToolingPackage ManagementBioinformatics Tool PackagingDevOps

nf-core/sarek

Oct 2025 Oct 2025
1 Month active

Languages Used

nf

Technical Skills

BioinformaticsNextflowVCF Annotation

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