nf-core/modules
Sep 2025 – May 2026
2 Months active
Languages Used
ShellGroovyYAML
Technical Skills
DevOpsScriptingShell ScriptingNextflowbioinformaticsdata processing
Manas
PROFILE
Manas
Contributed to the nf-core/modules repository by developing an end-to-end structural variant data processing pipeline for the OctopusV initiative, enabling standardized SV calls, cleaning, merging, visualization, and classification of genomic data. Leveraged Nextflow, Groovy, and Shell scripting to implement new modules for SV standardization, cross-sample merging, and SVCF-to-VCF conversion, integrating test-driven development and robust workflow components. Additionally, refactored annotation installation logic to prioritize version-prefixed tags, improving reproducibility and reducing installation failures. Demonstrated expertise in DevOps, bioinformatics, and data visualization while maintaining code quality through targeted fixes, clear commit messages, and collaborative review processes across the project.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
7Total
Bugs
0
Commits
7
Features
2
Lines of code
1,746
Activity Months2
Your Network
184 peopleWork History
May 2026
6 Commits • 1 Features
May 1, 2026During May 2026, nf-core/modules delivered a comprehensive Structural Variant Data Processing Pipeline under the OctopusV initiative, establishing end-to-end SV standardization, cleaning, merging, plotting, conversion, and classification. The work enables standardized SV calls in OctopuSV SVCF format, clean VCF/SVCF data, cross-sample merging with visualization outputs, SV statistics plotting, and an SVCF-to-VCF conversion workflow, culminating in SAVANA-based classification. This release introduces a suite of new nf-core/octopusv modules and updated workflow components, accompanied by tests and snaps to ensure reliability.
6 Commits • 1 Features
May 1, 2026During May 2026, nf-core/modules delivered a comprehensive Structural Variant Data Processing Pipeline under the OctopusV initiative, establishing end-to-end SV standardization, cleaning, merging, plotting, conversion, and classification. The work enables standardized SV calls in OctopuSV SVCF format, clean VCF/SVCF data, cross-sample merging with visualization outputs, SV statistics plotting, and an SVCF-to-VCF conversion workflow, culminating in SAVANA-based classification. This release introduces a suite of new nf-core/octopusv modules and updated workflow components, accompanied by tests and snaps to ensure reliability.
May 2026
September 2025
1 Commits • 1 Features
Sep 1, 2025September 2025 monthly summary for nf-core/modules: Key features delivered, major fixes, impact, and skills demonstrated. Focus on business value and technical achievements.
September 2025
1 Commits • 1 Features
Sep 1, 2025September 2025 monthly summary for nf-core/modules: Key features delivered, major fixes, impact, and skills demonstrated. Focus on business value and technical achievements.
Activity
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Quality Metrics
Correctness88.6%
Maintainability83.0%
Architecture88.6%
Performance80.0%
AI Usage28.6%
Skills & Technologies
Programming Languages
GroovyShellYAML
Technical Skills
DevOpsNextflowScriptingShell Scriptingbioinformaticsdata processingdata visualizationgenomicssoftware testingtesting
Repositories Contributed To
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