galaxyproject/tools-iuc
Mar 2026 – Mar 2026
1 Month active
Languages Used
BAMPythonXMLYAML
Technical Skills
Galaxy tool developmentPython scriptingbioinformaticsdata analysisplugin developmenttool development
Ubuntu
PROFILE
Ubuntu
During March 2026, work on the galaxyproject/tools-iuc repository centered on developing and integrating three core features for low-depth sequencing analysis. This included building a Python-based tool to infer biological sex from relative sex-chromosome coverage and introducing EndorSpy, which calculates endogenous DNA metrics from BAM files using samtools flagstats. The developer also enhanced reporting reproducibility by restructuring legacy tools and implementing MultiQC plugins in YAML and XML to standardize outputs from AdapterRemoval, mapDamage, Preseq, and SexDetERRmine. The codebase was streamlined by deprecating outdated tools, reflecting a focus on maintainability and efficient data analysis within bioinformatics workflows.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
4Total
Bugs
0
Commits
4
Features
3
Lines of code
1,233
Activity Months1
Your Network
131 peopleShared Repositories
131
Work History
March 2026
4 Commits • 3 Features
Mar 1, 2026March 2026 monthly summary for galaxyproject/tools-iuc focused on delivering core capabilities for low-depth sequencing analysis and improving reporting through tool integration and deprecation/restructuring of legacy tooling. Three major features were delivered, with reporting aligned via MultiQC plugins to improve reproducibility and efficiency.
4 Commits • 3 Features
Mar 1, 2026March 2026 monthly summary for galaxyproject/tools-iuc focused on delivering core capabilities for low-depth sequencing analysis and improving reporting through tool integration and deprecation/restructuring of legacy tooling. Three major features were delivered, with reporting aligned via MultiQC plugins to improve reproducibility and efficiency.
March 2026
Activity
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Quality Metrics
Correctness100.0%
Maintainability90.0%
Architecture100.0%
Performance90.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
BAMPythonXMLYAML
Technical Skills
Galaxy tool developmentPython scriptingbioinformaticsdata analysisplugin developmenttool development
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