nf-core/modules
Feb 2026 – Feb 2026
1 Month active
Languages Used
GroovyYAML
Technical Skills
Nextflowbioinformaticscontainerizationdata processingimage processingsoftware development
Thusheera Kumarasekara
PROFILE
Thusheera Kumarasekara
Over a two-month period, contributed to bioconda/bioconda-recipes and nf-core/modules by developing and enhancing image processing workflows for tissue imaging. Delivered the Stainwarpy 0.1.7 release, improving image registration between multiplexed and H&E stained tissue images, and addressed packaging reliability through dependency and metadata updates using Python and YAML. In nf-core/modules, implemented new Nextflow modules for extracting single-channel images, registering tissue images, and transforming segmentation masks, with a focus on reproducibility and compatibility. Integrated containerization and updated testing to ensure stable downstream workflows, demonstrating depth in bioinformatics, data processing, and software development within collaborative open-source environments.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
5Total
Bugs
0
Commits
5
Features
2
Lines of code
1,018
Activity Months2
Your Network
731 peopleShared Repositories
731
Work History
February 2026
4 Commits • 1 Features
Feb 1, 2026February 2026 (2026-02): Delivered a feature-focused upgrade to nf-core/modules centered on stainwarpy-based image processing and registration workflows for tissue imaging. Implemented end-to-end modules and updated tooling to improve reproducibility and cross-modality analysis across multiplexed and H&E images. Consolidated environment and metadata to align with nf-core standards, and refreshed tests to ensure stability in downstream workflows.
4 Commits • 1 Features
Feb 1, 2026February 2026 (2026-02): Delivered a feature-focused upgrade to nf-core/modules centered on stainwarpy-based image processing and registration workflows for tissue imaging. Implemented end-to-end modules and updated tooling to improve reproducibility and cross-modality analysis across multiplexed and H&E images. Consolidated environment and metadata to align with nf-core standards, and refreshed tests to ensure stability in downstream workflows.
February 2026
January 2026
1 Commits • 1 Features
Jan 1, 2026Delivered a stable Stainwarpy 0.1.7 release in bioconda-recipes, delivering enhanced image registration between multiplexed and H&E stained tissue images. Fixed critical packaging issues (corrected source tarball URL) and updated meta.yaml dependencies to support newer runtimes. Added run_exports to guarantee downstream compatibility with dependent packages. This work improves installation reliability, accelerates image analysis workflows, and strengthens cross-package compatibility within the Bioconda ecosystem.
January 2026
1 Commits • 1 Features
Jan 1, 2026Delivered a stable Stainwarpy 0.1.7 release in bioconda-recipes, delivering enhanced image registration between multiplexed and H&E stained tissue images. Fixed critical packaging issues (corrected source tarball URL) and updated meta.yaml dependencies to support newer runtimes. Added run_exports to guarantee downstream compatibility with dependent packages. This work improves installation reliability, accelerates image analysis workflows, and strengthens cross-package compatibility within the Bioconda ecosystem.
Activity
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Quality Metrics
Correctness92.0%
Maintainability84.0%
Architecture88.0%
Performance84.0%
AI Usage32.0%
Skills & Technologies
Programming Languages
GroovyYAML
Technical Skills
NextflowPythonbioinformaticscontainerizationdata processingdependency managementimage processingpackage managementsoftware developmenttesting
Repositories Contributed To
Overview of all repositories you've contributed to across your timeline
bioconda/bioconda-recipes
Jan 2026 – Jan 2026
1 Month active
Languages Used
YAML
Technical Skills
Pythondependency managementpackage management