BiodataAnalysisGroup/BioHackathon
Nov 2024 – Nov 2024
1 Month active
Languages Used
DockerfilePythonShell
Technical Skills
API InteractionCommand Line Interface (CLI)Data ProcessingDevOpsDockerPython Environment Management
theinvisibleliya
PROFILE
Theinvisibleliya
Contributed to the BiodataAnalysisGroup/BioHackathon repository by developing a Python-based data extraction script that interacts with the KnockTF API to automate retrieval and processing of gene data, outputting results in CSV format for downstream analysis. Leveraged skills in web scraping, command line interface design, and data processing to streamline gene search and dataset identification. Additionally, created Dockerfiles to containerize the SCENIC+ workflow, ensuring reproducible Python environments and simplifying dependency management with Docker and Shell scripting. These efforts reduced manual data preparation, improved reproducibility, and enhanced onboarding and collaboration for future research and validation cycles within the project.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
2
Lines of code
389
Activity Months1
Your Network
4 peopleShared Repositories
4
Work History
November 2024
2 Commits • 2 Features
Nov 1, 2024Concise monthly summary for 2024-11 focusing on delivering data extraction and reproducible deployment capabilities for the BioHackathon project, with emphasis on business value, technical achievements, and future readiness.
2 Commits • 2 Features
Nov 1, 2024Concise monthly summary for 2024-11 focusing on delivering data extraction and reproducible deployment capabilities for the BioHackathon project, with emphasis on business value, technical achievements, and future readiness.
November 2024
Activity
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Quality Metrics
Correctness85.0%
Maintainability80.0%
Architecture80.0%
Performance80.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
DockerfilePythonShell
Technical Skills
API InteractionCommand Line Interface (CLI)Data ProcessingDevOpsDockerPython Environment ManagementWeb Scraping
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