childhealthbiostatscore/CHCO-Code
Jun 2025 – Jun 2025
1 Month active
Languages Used
PythonR
Technical Skills
BioinformaticsData AnalysisData VisualizationPython ProgrammingR ProgrammingR programming
Ye Ji Choi
PROFILE
Ye Ji Choi
Yejin Choi developed an end-to-end single-cell RNA-seq analysis pipeline for the childhealthbiostatscore/CHCO-Code repository, enabling researchers to perform pseudotime analysis, gene expression profiling, and cell-cell communication studies. The pipeline leveraged R and Python, utilizing Seurat, SingleCellExperiment, and nebula for core analyses, and integrated CellChat workflows for communication inference and visualization. Yejin created reproducible R Markdown notebooks with detailed templates and documentation, supporting scalable and shareable reporting. The work demonstrated depth through iterative integration of LIANA and enhanced CellChat support, providing a robust foundation for downstream bioinformatics analyses and facilitating biological insight generation without introducing bugs during the development period.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
2Total
Bugs
0
Commits
2
Features
1
Lines of code
2,298
Activity Months1
Your Network
48 peopleSame Organization
@n3438.hyak.local1
Work History
June 2025
2 Commits • 1 Features
Jun 1, 2025June 2025 CHCO-Code monthly summary: Delivered an end-to-end single-cell RNA-seq analysis pipeline with pseudotime, gene expression profiling, and cell-cell communication analyses; created reproducible R Markdown notebooks; initiated integrated CellChat/LIANA workflows; enabling researchers to derive biological insights and generate shareable reports at scale.
2 Commits • 1 Features
Jun 1, 2025June 2025 CHCO-Code monthly summary: Delivered an end-to-end single-cell RNA-seq analysis pipeline with pseudotime, gene expression profiling, and cell-cell communication analyses; created reproducible R Markdown notebooks; initiated integrated CellChat/LIANA workflows; enabling researchers to derive biological insights and generate shareable reports at scale.
June 2025
Activity
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Quality Metrics
Correctness80.0%
Maintainability80.0%
Architecture80.0%
Performance60.0%
AI Usage20.0%
Skills & Technologies
Programming Languages
PythonR
Technical Skills
BioinformaticsData AnalysisData VisualizationPython ProgrammingR ProgrammingR programmingSingle-cell RNA sequencingSingle-cell RNA sequencing analysisStatistical Modeling
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