SPAAM-community/AncientMetagenomeDir
Jan 2025 – Oct 2025
7 Months active
Languages Used
TSVJSONMarkdownNAtsvNone
Technical Skills
Data CurationBioinformaticsBioinformatics Data ManagementConfiguration ManagementData EntryData Management
KaHea-21
PROFILE
Kahea-21
Katherine Hearne contributed to the SPAAM-community/AncientMetagenomeDir repository by engineering robust data curation pipelines and expanding the catalog of archaeological and bioinformatics datasets. She integrated and updated complex TSV and JSON data structures, focusing on radiocarbon dating, host-associated genome metadata, and provenance tracking. Her work involved meticulous data cleaning, validation, and documentation, ensuring high-quality, reproducible datasets for downstream genomic analyses. Katherine applied configuration management and technical writing skills to maintain changelogs and improve release transparency. Through targeted bug fixes and schema enhancements, she strengthened data integrity and usability, delivering a maintainable resource that supports reliable historical and bioinformatics research.
Overall Statistics
Feature vs Bugs
93%Features
Repository Contributions
299Total
Bugs
6
Commits
299
Features
84
Lines of code
1,560
Activity Months7
Your Network
10 people
Work History
October 2025
1 Commits
Oct 1, 2025Month: 2025-10. Focused on data integrity improvements in the AncientMetagenomeDir repository. Delivered a targeted bug fix to ensure RodriguezVarela2024 reference depth reporting aligns with the expected depth metadata format for the ancient singlegenome host-associated dataset, reducing downstream data inconsistencies and improving reliability for downstream analyses.
1 Commits
Oct 1, 2025Month: 2025-10. Focused on data integrity improvements in the AncientMetagenomeDir repository. Delivered a targeted bug fix to ensure RodriguezVarela2024 reference depth reporting aligns with the expected depth metadata format for the ancient singlegenome host-associated dataset, reducing downstream data inconsistencies and improving reliability for downstream analyses.
October 2025
June 2025
26 Commits • 8 Features
Jun 1, 2025June 2025: Key updates to AncientMetagenomeDir focusing on data accuracy, dataset coverage, and release hygiene. Achievements include updated dating data, new dataset entries, and standardized lab metadata, delivering clearer provenance for researchers and streamlined releases.
June 2025
26 Commits • 8 Features
Jun 1, 2025June 2025: Key updates to AncientMetagenomeDir focusing on data accuracy, dataset coverage, and release hygiene. Achievements include updated dating data, new dataset entries, and standardized lab metadata, delivering clearer provenance for researchers and streamlined releases.
May 2025
46 Commits • 15 Features
May 1, 2025May 2025 performance summary for SPAAM-community/AncientMetagenomeDir: Focused on expanding C14 genealogical coverage, enhancing data accuracy, and improving traceability through documentation updates. Delivered significant data integration and host-dits improvements, enabling richer temporal analyses and stronger provenance.
46 Commits • 15 Features
May 1, 2025May 2025 performance summary for SPAAM-community/AncientMetagenomeDir: Focused on expanding C14 genealogical coverage, enhancing data accuracy, and improving traceability through documentation updates. Delivered significant data integration and host-dits improvements, enabling richer temporal analyses and stronger provenance.
May 2025
April 2025
41 Commits • 8 Features
Apr 1, 2025April 2025: Delivered critical data updates and dataset expansions to AncientMetagenomeDir, strengthening data accuracy, metadata integrity, and repository maintainability to enable reliable downstream analyses and reporting for researchers and project stakeholders.
April 2025
41 Commits • 8 Features
Apr 1, 2025April 2025: Delivered critical data updates and dataset expansions to AncientMetagenomeDir, strengthening data accuracy, metadata integrity, and repository maintainability to enable reliable downstream analyses and reporting for researchers and project stakeholders.
March 2025
111 Commits • 18 Features
Mar 1, 2025During 2025-03, SPAAM-community/AncientMetagenomeDir delivered substantial data curation and quality improvements across host-associated dating datasets, expanded historical dating coverage, and targeted fixes to dataset schemas and radiocarbon sample ID handling. Key outcomes include batch updates to ancientsinglegenome-hostassociated_dates.tsv and related dates, incorporation of C14 Schuenemann2018 data, new historical range dates, calibration curve update, and updated changelog/documentation. These efforts directly enhance dating accuracy, reproducibility, and downstream analyses, while strengthening data governance and engineering practices.
111 Commits • 18 Features
Mar 1, 2025During 2025-03, SPAAM-community/AncientMetagenomeDir delivered substantial data curation and quality improvements across host-associated dating datasets, expanded historical dating coverage, and targeted fixes to dataset schemas and radiocarbon sample ID handling. Key outcomes include batch updates to ancientsinglegenome-hostassociated_dates.tsv and related dates, incorporation of C14 Schuenemann2018 data, new historical range dates, calibration curve update, and updated changelog/documentation. These efforts directly enhance dating accuracy, reproducibility, and downstream analyses, while strengthening data governance and engineering practices.
March 2025
February 2025
68 Commits • 34 Features
Feb 1, 2025February 2025 performance for SPAAM-community/AncientMetagenomeDir: Delivered extensive data catalog expansion and quality improvements. Key features delivered include Patrono2022 integration and broad ingestion of C14 radiocarbon datasets across Warinner2014 to deBarrosDamgaard2018, plus multiple targeted C14 data ingestions (Majander2020, Spyrou2018, Schuenemann 2013/2018, Zhou2018.tsv, Sabin2020, Kay2014/2015, and Barquera2020). Data governance and provenance were strengthened via updates to material.json, ancientsinglegenome-hostassociated_dates, and new citations (PattersonRoss2018). Documentation maintained with CHANGELOG updates. Business value: richer, more discoverable dataset enabling robust historical analyses and reproducibility.
February 2025
68 Commits • 34 Features
Feb 1, 2025February 2025 performance for SPAAM-community/AncientMetagenomeDir: Delivered extensive data catalog expansion and quality improvements. Key features delivered include Patrono2022 integration and broad ingestion of C14 radiocarbon datasets across Warinner2014 to deBarrosDamgaard2018, plus multiple targeted C14 data ingestions (Majander2020, Spyrou2018, Schuenemann 2013/2018, Zhou2018.tsv, Sabin2020, Kay2014/2015, and Barquera2020). Data governance and provenance were strengthened via updates to material.json, ancientsinglegenome-hostassociated_dates, and new citations (PattersonRoss2018). Documentation maintained with CHANGELOG updates. Business value: richer, more discoverable dataset enabling robust historical analyses and reproducibility.
January 2025
6 Commits • 1 Features
Jan 1, 2025January 2025 monthly summary for SPAAM-community/AncientMetagenomeDir. This period focused on data curation and release preparation for Patrono2022, delivering updated samples, corrected metadata, and a comprehensive release notes entry to improve data quality and downstream usability.
6 Commits • 1 Features
Jan 1, 2025January 2025 monthly summary for SPAAM-community/AncientMetagenomeDir. This period focused on data curation and release preparation for Patrono2022, delivering updated samples, corrected metadata, and a comprehensive release notes entry to improve data quality and downstream usability.
January 2025
Activity
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Quality Metrics
Correctness97.2%
Maintainability97.8%
Architecture96.4%
Performance96.4%
AI Usage20.0%
Skills & Technologies
Programming Languages
JSONMarkdownNANoneTSVtsv
Technical Skills
Archaeological DataBioinformaticsBioinformatics Data ManagementConfiguration ManagementData CleaningData CurationData EntryData FormattingData ManagementData ValidationDocumentationGenomics Data ManagementTechnical Writing
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