AFM-SPM/TopoStats
Nov 2024 – Nov 2024
1 Month active
Languages Used
NonePython
Technical Skills
Code CleanupData AnalysisDebuggingImage ProcessingRegression TestingScientific Computing
TomC
PROFILE
Tomc
Tom Catley developed and integrated a disordered trace DNA width measurement feature for the AFM-SPM/TopoStats repository, focusing on enhancing the accuracy of DNA analytics in scientific computing workflows. Using Python, Tom implemented a static method for width calculation and connected it to the trace_image_disordered pipeline, enabling automated measurement for complex trace data. He expanded regression testing and test coverage to ensure reliability and maintainability, while also updating documentation to reflect the new functionality. Tom’s work included code cleanup and removal of debugging prints, resulting in a more maintainable codebase and supporting improved downstream data analysis and decision-making processes.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
12Total
Bugs
0
Commits
12
Features
1
Lines of code
164
Activity Months1
Your Network
23 people
Work History
November 2024
12 Commits • 1 Features
Nov 1, 20242024-11: Delivered Disordered Trace DNA Width Measurement in TopoStats (static calculate_dna_width, integration into trace_image_disordered), expanded test coverage and regression targets, updated docs, and cleaned up debugging prints. No major bugs fixed this month. Business value: higher accuracy in disordered-trace DNA width analytics and improved maintainability.
12 Commits • 1 Features
Nov 1, 20242024-11: Delivered Disordered Trace DNA Width Measurement in TopoStats (static calculate_dna_width, integration into trace_image_disordered), expanded test coverage and regression targets, updated docs, and cleaned up debugging prints. No major bugs fixed this month. Business value: higher accuracy in disordered-trace DNA width analytics and improved maintainability.
November 2024
Activity
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Quality Metrics
Correctness80.0%
Maintainability86.6%
Architecture78.4%
Performance63.4%
AI Usage20.0%
Skills & Technologies
Programming Languages
NonePython
Technical Skills
Code CleanupData AnalysisDebuggingImage ProcessingRegression TestingScientific ComputingSoftware DevelopmentSoftware TestingTesting
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