snakemake/snakemake-wrappers
Sep 2025 – Sep 2025
1 Month active
Languages Used
PythonShellYAML
Technical Skills
BioinformaticsData ConversionPython ScriptingShell ScriptingSnakemakeVCF Processing
tdayris
PROFILE
Tdayris
In September 2025, Thibault Dayris developed four new genomics-focused Snakemake wrappers for the snakemake-wrappers repository, expanding automated data processing capabilities for large-scale bioinformatics workflows. He implemented wrappers such as samshee for Illumina SampleSheet conversion with format detection and validation, vcf2vcf for VCF file reformatting, vcf2maf for VCF to MAF conversion with Ensembl VEP integration, and pyEffGenomeSize for calculating effective genome size from BAM files. His work leveraged Python, Shell scripting, and YAML configuration to ensure reproducibility and modularity. The depth of these contributions enhanced workflow management and streamlined complex genomics data transformations without introducing new bugs.
Overall Statistics
Feature vs Bugs
100%Features
Repository Contributions
4Total
Bugs
0
Commits
4
Features
1
Lines of code
765
Activity Months1
Work History
September 2025
4 Commits • 1 Features
Sep 1, 2025In September 2025, delivered a set of new genomics-focused Snakemake wrappers in the snakemake-wrappers repository, expanding end-to-end data processing capabilities and enabling reproducible pipelines for large-scale genomics workloads.
4 Commits • 1 Features
Sep 1, 2025In September 2025, delivered a set of new genomics-focused Snakemake wrappers in the snakemake-wrappers repository, expanding end-to-end data processing capabilities and enabling reproducible pipelines for large-scale genomics workloads.
September 2025
Activity
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Quality Metrics
Correctness100.0%
Maintainability100.0%
Architecture100.0%
Performance80.0%
AI Usage60.0%
Skills & Technologies
Programming Languages
PythonShellYAML
Technical Skills
BioinformaticsData ConversionPython ScriptingShell ScriptingSnakemakeVCF ProcessingVariant AnnotationWorkflow ManagementYAML Configuration
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